Standout Papers

Chromatin signature reveals over a thousand highly conserved large non-co... 2004 2026 2011 2018 3.2k
  1. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals (2009)
    Mitchell Guttman, Ido Amit et al. Nature
  2. Mapping and analysis of chromatin state dynamics in nine human cell types (2011)
    Jason Ernst, Pouya Kheradpour et al. Nature
  3. Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila (2007)
    Julius Brennecke, Alexei A. Aravin et al. Cell
  4. Transcriptional regulatory code of a eukaryotic genome (2004)
    Christopher Harbison, Tong Ihn Lee et al. Nature
  5. Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals (2005)
    Xiaohui Xie, Jun Lü et al. Nature
  6. Sequencing and comparison of yeast species to identify genes and regulatory elements (2003)
    Manolis Kellis, Nick Patterson et al. Nature
  7. Single-cell transcriptomic analysis of Alzheimer’s disease (2019)
    Hansruedi Mathys, José Dávila-Velderrain et al. Nature
  8. The NIH Roadmap Epigenomics Mapping Consortium (2010)
    B Bernstein, J Stamatoyannopoulos et al. Nature Biotechnology
  9. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae (2004)
    Manolis Kellis, Bruce W. Birren et al. Nature
  10. Wisdom of crowds for robust gene network inference (2012)
    Daniel Marbach, James C. Costello et al. Nature Methods
  11. FTO Obesity Variant Circuitry and Adipocyte Browning in Humans (2015)
    Melina Claussnitzer, Simon N. Dankel et al. New England Journal of Medicine
  12. The Tissue-Specific lncRNA Fendrr Is an Essential Regulator of Heart and Body Wall Development in the Mouse (2013)
    Phillip Grote, Lars Wittler et al. Developmental Cell
  13. PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions (2011)
    Michael F. Lin, Irwin Jungreis et al. Bioinformatics
  14. Discovery and characterization of chromatin states for systematic annotation of the human genome (2010)
    Jason Ernst, Manolis Kellis Nature Biotechnology
  15. Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo (2013)
    Silvi Rouskin, Meghan Zubradt et al. Nature
  16. Unlocking the secrets of the genome (2009)
    S Celniker, Laura A. L. Dillon et al. Nature
  17. HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease (2015)
    Lucas D. Ward, Manolis Kellis Nucleic Acids Research
  18. RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo (2007)
    Julia Zeitlinger, Alexander Stark et al. Nature Genetics
  19. An endogenous small interfering RNA pathway in Drosophila (2008)
    B. Czech, Colin D. Malone et al. Nature
  20. Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes (2015)
    Ram Madabhushi, Fan Gao et al. Cell
  21. Chromatin-state discovery and genome annotation with ChromHMM (2017)
    Jason Ernst, Manolis Kellis Nature Protocols
  22. APOE4 disrupts intracellular lipid homeostasis in human iPSC-derived glia (2021)
    Grzegorz Sienski, Priyanka Narayan et al. Science Translational Medicine
  23. Single-cell dissection of the human brain vasculature (2022)
    F. García, Na Sun et al. Nature
  24. Human microglial state dynamics in Alzheimer’s disease progression (2023)
    Na Sun, Matheus B. Victor et al. Cell
  25. Single-cell multiregion dissection of Alzheimer’s disease (2024)
    Hansruedi Mathys, Carles A. Boix et al. Nature

Immediate Impact

7 by Nobel laureates 83 from Science/Nature 164 standout
Sub-graph 1 of 15

Citing Papers

One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Two independent modes of chromatin organization revealed by cohesin removal
2017 StandoutNature
26 intermediate papers

Works of Manolis Kellis being referenced

Constitutive nuclear lamina–genome interactions are highly conserved and associated with A/T-rich sequence
2012
Mapping and analysis of chromatin state dynamics in nine human cell types
2011 StandoutNature
and 21 more

Author Peers

Author Last Decade Papers Cites
Manolis Kellis 31334 6143 8504 219 38.1k
Chris P. Ponting 29213 5298 9309 298 37.9k
Mark D. Robinson 28590 5379 7249 164 45.5k
Nitin S. Baliga 25778 3763 5741 140 40.2k
Jay Shendure 34896 16658 8042 295 50.4k
Janan T. Eppig 25548 5776 3692 105 35.9k
B Wold 27220 5507 5222 113 37.9k
Judith A. Blake 25570 4839 3667 124 35.7k
J. Michael Cherry 28190 5231 3970 91 38.7k
Lior Pachter 35321 7543 7926 163 53.7k
R Myers 32120 12552 4268 297 49.2k

All Works

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2026