Standout Papers

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isofo... 2009 2026 2014 2020 11.5k
  1. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation (2010)
    Cole Trapnell, Brian A. Williams et al. Nature Biotechnology
  2. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks (2012)
    Cole Trapnell, Adam Roberts et al. Nature Protocols
  3. TopHat: discovering splice junctions with RNA-Seq (2009)
    Cole Trapnell, Lior Pachter et al. Bioinformatics
  4. Near-optimal probabilistic RNA-seq quantification (2016)
    Nicolas Bray, Harold Pimentel et al. Nature Biotechnology
  5. Differential analysis of gene regulation at transcript resolution with RNA-seq (2012)
    Cole Trapnell, David G. Hendrickson et al. Nature Biotechnology
  6. VISTA: computational tools for comparative genomics (2004)
    Kelly A. Frazer, Lior Pachter et al. Nucleic Acids Research
  7. Disordered Microbial Communities in Asthmatic Airways (2010)
    Markus Hilty, Conor M. Burke et al. PLoS ONE
  8. Improving RNA-Seq expression estimates by correcting for fragment bias (2011)
    Adam Roberts, Cole Trapnell et al. Genome biology
  9. Differential analysis of RNA-seq incorporating quantification uncertainty (2017)
    Harold Pimentel, Nicolas Bray et al. Nature Methods
  10. VISTA : visualizing global DNA sequence alignments of arbitrary length (2000)
    Michael Brudno, Alexander Poliakov et al. Bioinformatics
  11. Streaming fragment assignment for real-time analysis of sequencing experiments (2012)
    Adam Roberts, Lior Pachter Nature Methods
  12. Identification of novel transcripts in annotated genomes using RNA-Seq (2011)
    Adam Roberts, Harold Pimentel et al. Bioinformatics
  13. Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans (2007)
    David J Begun, Alisha K. Holloway et al. PLoS Biology
  14. Museum of spatial transcriptomics (2022)
    Lambda Moses, Lior Pachter Nature Methods
  15. Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq) (2011)
    Julius B. Lucks, Stefanie Mortimer et al. Proceedings of the National Academy of Sciences
  16. Modular, efficient and constant-memory single-cell RNA-seq preprocessing (2021)
    Páll Melsted, A. Sina Booeshaghi et al. Nature Biotechnology
  17. The specious art of single-cell genomics (2023)
    Tara Chari, Lior Pachter PLoS Computational Biology

Immediate Impact

16 by Nobel laureates 48 from Science/Nature 138 standout
Sub-graph 1 of 16

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Works of Lior Pachter being referenced

Near-optimal probabilistic RNA-seq quantification
2016 Standout

Author Peers

Author Last Decade Papers Cites
Lior Pachter 35321 7543 7926 12097 163 53.7k
Mark D. Robinson 28590 5379 7249 6568 164 45.5k
Michael W. Pfaffl 30179 6581 6007 9283 240 60.8k
Trey Ideker 44414 6165 7931 6107 236 63.2k
Jo Vandesompele 29490 5254 11157 5475 295 49.9k
Gavin Sherlock 33340 6070 4556 5252 123 46.6k
Michael Ashburner 32949 7879 3486 6241 178 46.5k
B Wold 27220 5507 5222 6755 113 37.9k
T Gingeras 32513 6790 8263 4951 129 50.0k
Michael I. Love 37348 6718 8531 10730 86 64.4k
Christian von Mering 43997 6063 7284 6730 132 66.8k

All Works

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