T Gingeras

137.5k total citations · 13 hit papers
134 papers, 51.6k citations indexed

About

T Gingeras is a scholar working on Molecular Biology, Genetics and Cancer Research. According to data from OpenAlex, T Gingeras has authored 134 papers receiving a total of 51.6k indexed citations (citations by other indexed papers that have themselves been cited), including 107 papers in Molecular Biology, 26 papers in Genetics and 17 papers in Cancer Research. Recurrent topics in T Gingeras's work include RNA Research and Splicing (35 papers), RNA and protein synthesis mechanisms (31 papers) and Genomics and Chromatin Dynamics (29 papers). T Gingeras is often cited by papers focused on RNA Research and Splicing (35 papers), RNA and protein synthesis mechanisms (31 papers) and Genomics and Chromatin Dynamics (29 papers). T Gingeras collaborates with scholars based in United States, Spain and United Kingdom. T Gingeras's co-authors include Alexander Dobin, Jörg Drenkow, Carrie Davis, Felix Schlesinger, Philippe Batut, Chris Zaleski, Mark Chaisson, Sonali Jha, Philipp Kapranov and Stephen P. A. Fodor and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

T Gingeras

131 papers receiving 50.8k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

STAR: ultrafast universal RNA-seq aligner

2012 28.9k citations Alexander Dobin, Felix Schlesinger et al. profile →
CD127 expression inversely correlates with FoxP3 and suppressive function of human CD4+ T reg cells

2006 2.1k citations Philipp Kapranov, T Gingeras et al. The Journal of Experimental Medicine profile →
High density synthetic oligonucleotide arrays

1999 1.6k citations T Gingeras et al. Nature Genetics profile →
Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse

2005 1.2k citations Stefan Bekiranov, Dione K. Bailey et al. Cell profile →
Genome-wide analysis of estrogen receptor binding sites

2006 1.1k citations Jason S. Carroll, Clifford A. Meyer et al. Nature Genetics profile →
Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution

2005 881 citations Jill Cheng, Philipp Kapranov et al. Science profile →
Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs

2004 876 citations Stefan Bekiranov, Philipp Kapranov et al. Cell profile →
Mapping RNA‐seq Reads with STAR

2015 786 citations Alexander Dobin, T Gingeras profile →
Large-Scale Transcriptional Activity in Chromosomes 21 and 22

2002 664 citations Philipp Kapranov, Jörg Drenkow et al. Science profile →
Genome-wide transcription and the implications for genomic organization

2007 547 citations Philipp Kapranov, Aarron Willingham et al. profile →
Global Transcription in Pluripotent Embryonic Stem Cells

2008 512 citations Sol Efroni, Jill Cheng et al. Cell stem cell profile →
Synthetic spike-in standards for RNA-seq experiments

2011 454 citations Felix Schlesinger, T Gingeras et al. Genome Research profile →
Nucleotide sequences from the adenovirus-2 genome.

1982 288 citations T Gingeras et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
T Gingeras United States	65	33.3k	8.4k	7.7k	7.0k	5.1k	134	51.6k
Richard A. Lempicki United States	46	36.6k 1.1×	11.0k 1.3×	8.5k 1.1×	7.5k 1.1×	2.6k 0.5×	130	60.5k
Richard A. Young United States	134	59.3k 1.8×	7.2k 0.9×	6.2k 0.8×	7.6k 1.1×	4.8k 0.9×	287	70.5k
Jo Vandesompele Belgium	70	29.8k 0.9×	11.2k 1.3×	4.5k 0.6×	5.3k 0.8×	5.6k 1.1×	299	50.4k
Mark D. Robinson Switzerland	57	29.2k 0.9×	7.4k 0.9×	5.5k 0.7×	5.5k 0.8×	6.7k 1.3×	173	46.9k
Wei Shi Australia	39	29.5k 0.9×	9.2k 1.1×	10.1k 1.3×	4.7k 0.7×	4.4k 0.9×	94	51.3k
Brad T. Sherman United States	23	37.7k 1.1×	11.4k 1.4×	7.0k 0.9×	7.7k 1.1×	2.8k 0.5×	43	59.6k
Robert G. Roeder United States	144	51.2k 1.5×	4.8k 0.6×	6.6k 0.9×	10.3k 1.5×	3.6k 0.7×	530	61.9k
Guangchuang Yu China	33	23.6k 0.7×	8.1k 1.0×	6.5k 0.8×	4.0k 0.6×	4.2k 0.8×	82	41.8k
Jörg Drenkow United States	14	20.9k 0.6×	5.5k 0.7×	4.8k 0.6×	3.9k 0.6×	3.8k 0.7×	20	33.2k
Michael I. Love United States	31	39.1k 1.2×	8.9k 1.1×	8.8k 1.1×	7.0k 1.0×	11.3k 2.2×	93	68.1k

Countries citing papers authored by T Gingeras

Since Specialization

Citations

This map shows the geographic impact of T Gingeras's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by T Gingeras with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites T Gingeras more than expected).

Fields of papers citing papers by T Gingeras

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by T Gingeras. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by T Gingeras. The network helps show where T Gingeras may publish in the future.

Co-authorship network of co-authors of T Gingeras

This figure shows the co-authorship network connecting the top 25 collaborators of T Gingeras. A scholar is included among the top collaborators of T Gingeras based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with T Gingeras. T Gingeras is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Ortiz‐Ramírez, Carlos, Bruno Guillotin, Xiaosa Xu, et al.. (2021). Ground tissue circuitry regulates organ complexity in maize and Setaria. Science. 374(6572). 1247–1252. 92 indexed citations

Zhang, Qiong, Ti‐Chun Chao, Veena S. Patil, et al.. (2019). The long noncoding RNA ROCKI regulates inflammatory gene expression. The EMBO Journal. 38(8). 73 indexed citations

Zhang, Xiao‐Ou, T Gingeras, & Zhiping Weng. (2019). Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function. Genome Research. 29(9). 1402–1414. 59 indexed citations

Schlesinger, Felix, Andrew D. Smith, T Gingeras, Gregory J. Hannon, & Emily Hodges. (2013). De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements. Genome Research. 23(10). 1601–1614. 58 indexed citations

Amid, Clara, Adam Frankish, Bronwen Aken, et al.. (2010). From identification to validation to gene count. Genome biology. 11(S1). 1 indexed citations

Zhang, Xueqing, Zheng Lian, Carolyn Padden, et al.. (2009). A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster. Blood. 113(11). 2526–2534. 288 indexed citations

Efroni, Sol, Jinming Cheng, Hesam Dehghani, et al.. (2008). Promiscuous global transcription in pluripotent embryonic stem cells. Cell stem cell. 12 indexed citations

Rada-Iglesias, Álvaro, Adam Ameur, Philipp Kapranov, et al.. (2008). Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders. Genome Research. 18(3). 380–392. 81 indexed citations

Rozowsky, Joel, Daniel E. Newburger, Jiaqian Wu, et al.. (2007). The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci. Genome Research. 17(6). 732–745. 20 indexed citations

10.

Gingeras, T. (2007). Origin of phenotypes: Genes and transcripts. Genome Research. 17(6). 682–690. 152 indexed citations

11.

Carroll, Jason S., Clifford A. Meyer, Jun S. Song, et al.. (2006). Genome-wide analysis of estrogen receptor binding sites. Nature Genetics. 38(11). 1289–1297. 1078 indexed citations breakdown →

12.

Willingham, Aarron & T Gingeras. (2006). TUF Love for “Junk” DNA. Cell. 125(7). 1215–1220. 120 indexed citations

13.

Cheng, Jill, Philipp Kapranov, Jörg Drenkow, et al.. (2005). Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution. Science. 308(5725). 1149–1154. 881 indexed citations breakdown →

14.

Kapranov, Philipp, Jörg Drenkow, Jill Cheng, et al.. (2005). Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays. Genome Research. 15(7). 987–997. 231 indexed citations

15.

Shi, Shuangping, Carl Nathan, Dirk Schnappinger, et al.. (2003). MyD88 Primes Macrophages for Full-Scale Activation by Interferon-γ yet Mediates Few Responses to Mycobacterium tuberculosis. The Journal of Experimental Medicine. 198(7). 987–997. 123 indexed citations

16.

Dong, Shoulian, et al.. (2001). Flexible Use of High-Density Oligonucleotide Arrays for Single-Nucleotide Polymorphism Discovery and Validation. Genome Research. 11(8). 1418–1424. 62 indexed citations

17.

Salamon, Hugh, Midori Kato‐Maeda, Peter M. Small, Jörg Drenkow, & T Gingeras. (2000). Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data. Genome Research. 10(12). 2044–2054. 13 indexed citations

18.

Gingeras, T, Ghassan Ghandour, Eugene Wang, et al.. (1998). Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays. Genome Research. 8(5). 435–448. 190 indexed citations

19.

Fahy, Eoin, et al.. (1994). Issues of variability, carryover contamination, and detection in 3SR-based assays.. Genome Research. 3(5). S83–S94. 5 indexed citations

20.

Gingeras, T, Douglas D. Richman, Deborah Y. Kwoh, & J C Guatelli. (1990). Methodologies for in vitro nucleic acid amplification and their applications. Veterinary Microbiology. 24(3-4). 235–251. 15 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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