Tyson R. Shepherd

1.6k citations

21 papers · 1.1k indexed · 1 hit paper · h-index 16

Co-authors: Mark Bathe Rémi Veneziano Eike‐Christian Wamhoff Ernesto J. Fuentes Hyungmin Jun Matthew B. Stone Sakul Ratanalert Sayak Mukherjee
Topics: Advanced biosensing and bioanalysis techniques (8 papers)RNA Interference and Gene Delivery (7 papers)Bacteriophages and microbial interactions (4 papers)
Cited by: Molecular Biology Ecology Cell Biology
Journals: Nucleic Acids Research Nature Communications Nature Materials
Partner nations: United States Sweden China

In The Last Decade

Tyson R. Shepherd

21 papers receiving 1.1k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Role of nanoscale antigen organization on B-cell activation probed using DNA origami

2020 311 citations Rémi Veneziano, Tyson J. Moyer et al. Nature Nanotechnology profile →

Peers

Countries citing papers authored by Tyson R. Shepherd

Since Specialization

Citations

This map shows the geographic impact of Tyson R. Shepherd's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tyson R. Shepherd with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tyson R. Shepherd more than expected).

Fields of papers citing papers by Tyson R. Shepherd

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tyson R. Shepherd. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tyson R. Shepherd. The network helps show where Tyson R. Shepherd may publish in the future.

Co-authorship network of co-authors of Tyson R. Shepherd

This figure shows the co-authorship network connecting the top 25 collaborators of Tyson R. Shepherd. A scholar is included among the top collaborators of Tyson R. Shepherd based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Tyson R. Shepherd. Tyson R. Shepherd is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	3D RNA-scaffolded wireframe origami 2023 ·Nature Communications ·(unknown),Matthew F. Allan,Shanshan Li,Tyson R. Shepherd,Sakul Ratanalert,Kaiming Zhang,Krista M. Pullen,Wah Chiu,Silvi Rouskin,Mark Bathe	29
2	Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli 2022 ·mSystems ·Mario L. Arrieta‐Ortiz,Min Pan,Amardeep Kaur,(unknown),Vivek Srinivas,(unknown),(unknown),Aaron N. Brooks,Tyson R. Shepherd,Nitin S. Baliga	9
3	Random access DNA memory using Boolean search in an archival file storage system 2021 ·Nature Materials ·James L. Banal,Tyson R. Shepherd,(unknown),(unknown),Miguel Reyes,Cheri M. Ackerman,Paul C. Blainey,Mark Bathe	93
4	lcbb/DNA-Memory-Blocks: Publication release 2021 ·Zenodo (CERN European Organization for Nuclear Research) ·James L. Banal,Tyson R. Shepherd,(unknown),(unknown),(unknown),Cheri M. Ackerman,Paul C. Blainey,Mark Bathe	1
5	Role of nanoscale antigen organization on B-cell activation probed using DNA origamibreakdown → 2020 ·Nature Nanotechnology ·Rémi Veneziano,Tyson J. Moyer,Matthew B. Stone,Eike‐Christian Wamhoff,Benjamin J. Read,Sayak Mukherjee,Tyson R. Shepherd,Jayajit Das,William R. Schief,Darrell J. Irvine,Mark Bathe	311
6	Autonomously designed free-form 2D DNA origami 2019 ·Science Advances ·Hyungmin Jun,Fei Zhang,Tyson R. Shepherd,Sakul Ratanalert,Xiaodong Qi,Hao Yan,Mark Bathe	111
7	Bioproduction of pure, kilobase-scale single-stranded DNA 2019 ·Scientific Reports ·Tyson R. Shepherd,(unknown),(unknown),Eike‐Christian Wamhoff,Mark Bathe	45
8	Conformational Dynamics and Cooperativity Drive the Specificity of a Protein-Ligand Interaction 2019 ·Biophysical Journal ·Xu Liu,(unknown),(unknown),Tyson R. Shepherd,Liping Yu,Ernesto J. Fuentes	8
9	Programming Structured DNA Assemblies to Probe Biophysical Processes 2019 ·Annual Review of Biophysics ·Eike‐Christian Wamhoff,James L. Banal,William P. Bricker,Tyson R. Shepherd,(unknown),Rémi Veneziano,Matthew B. Stone,Hyungmin Jun,Xiao Wang,Mark Bathe	53
10	Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges 2019 ·ACS Nano ·Hyungmin Jun,Tyson R. Shepherd,Kaiming Zhang,William P. Bricker,Shanshan Li,Wah Chiu,Mark Bathe	94
11	In vitro synthesis of gene-length single-stranded DNA 2018 ·Scientific Reports ·Rémi Veneziano,Tyson R. Shepherd,Sakul Ratanalert,(unknown),(unknown),Mark Bathe	64
12	De novo design and synthesis of a 30-cistron translation-factor module 2017 ·Nucleic Acids Research ·Tyson R. Shepherd,Liping Du,(unknown),Samudyata Samudyata,Jinfan Wang,Marcus Sjödin,Magnus Wetterhall,Tetsuya Yomo,Anthony Forster	28
13	Distinct Roles for Conformational Dynamics in Protein-Ligand Interactions 2016 ·Structure ·Xu Liu,(unknown),Tyson R. Shepherd,Young Joo Sun,Sarah R Hengel,Liping Yu,C. Andrew Fowler,Lokesh Gakhar,Ernesto J. Fuentes	19
14	The Structure of the Tiam1 PDZ Domain/ Phospho-Syndecan1 Complex Reveals a Ligand Conformation that Modulates Protein Dynamics 2013 ·Structure ·Xu Liu,Tyson R. Shepherd,Ann Murray,Zhen Xu,Ernesto J. Fuentes	32
15	Structural and functional insights into the molecular mechanism of rRNA m6A methyltransferase RlmJ 2013 ·Nucleic Acids Research ·(unknown),(unknown),Tyson R. Shepherd,Anthony Forster,M. Selmer	22
16	A novel pathway spatiotemporally activates Rac1 and redox signaling in response to fluid shear stress 2013 ·The Journal of Cell Biology ·Yunhao Liu,Caitlin Collins,William B. Kiosses,Ann Murray,(unknown),Tyson R. Shepherd,Ernesto J. Fuentes,Ellie Tzima	58
17	Crystal structure of RlmM, the 2′O-ribose methyltransferase for C2498 of Escherichia coli 23S rRNA 2012 ·Nucleic Acids Research ·(unknown),Tyson R. Shepherd,(unknown),Anthony Forster,M. Selmer	11
18	The Tiam1 PDZ Domain Couples to Syndecan1 and Promotes Cell–Matrix Adhesion 2010 ·Journal of Molecular Biology ·Tyson R. Shepherd,Suzi Klaus,Xu Liu,S. Ramaswamy,Kris A. DeMali,Ernesto J. Fuentes	39
19	Structural and Thermodynamic Analysis of PDZ–Ligand Interactions 2010 ·Methods in enzymology on CD-ROM/Methods in enzymology ·Tyson R. Shepherd,Ernesto J. Fuentes	16
20	Dynamics of an electronic impact oscillator 2003 ·Physics Letters A ·(unknown),Epaminondas Rosa,(unknown),Tyson R. Shepherd	4

About Tyson R. Shepherd

Tyson R. Shepherd is a scholar working on Cell Biology, Molecular Biology and Molecular Medicine, having authored 21 papers that have together received 1.1k indexed citations. Recurring topics across this work include Advanced biosensing and bioanalysis techniques (8 papers), RNA Interference and Gene Delivery (7 papers) and Bacteriophages and microbial interactions (4 papers). The work is most often cited by research in Molecular Biology (908 citations), Ecology (198 citations) and Cell Biology (93 citations). Tyson R. Shepherd has collaborated with scholars based in United States, Sweden and China. Frequent co-authors include Mark Bathe, Rémi Veneziano, Eike‐Christian Wamhoff, Ernesto J. Fuentes, Hyungmin Jun, Matthew B. Stone, Sakul Ratanalert, Sayak Mukherjee, Benjamin J. Read and Tyson J. Moyer. Their work appears in journals such as Nucleic Acids Research, Nature Communications and Nature Materials.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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