Timothy L. Bailey

45.6k citations

102 papers · 26.0k indexed · 9 hit papers · h-index 47

Impact in

Molecular Biology top 0.05%
- Genomics and Chromatin Dynamics
- RNA Research and Splicing
- RNA and protein synthesis mechanisms
- RNA modifications and cancer
- Genomics and Phylogenetic Studies
- Plant Gene Expression Analysis
- Photosynthetic Processes and Mechanisms
Plant Science top 0.05%
- Plant Molecular Biology Research

Papers in

Developmental Neuroscience 6
Molecular Biology 97
- Genomics and Chromatin Dynamics 45
- RNA and protein synthesis mechanisms 34
- Genomics and Phylogenetic Studies 27
- RNA Research and Splicing 19
- Machine Learning in Bioinformatics 14
- Gene expression and cancer classification 14
- Epigenetics and DNA Methylation 13
- RNA modifications and cancer 9

Co-authors: William Stafford Noble Charles E. Grant Wen‐Wu Li Fabian A. Buske Martin C. Frith Mikael Bodén Junxiao Ren Luca Clementi
Journals: Bioinformatics (23 papers)Nucleic Acids Research (13 papers)BMC Bioinformatics (8 papers)Journal of Computational Biology (4 papers)Genome Research (4 papers)
Partner nations: Australia United States United Kingdom

In The Last Decade

Timothy L. Bailey

102 papers receiving 25.7k citations

Hit Papers

9 papers align trajectories log scale

STREME: accurate and versatile sequence motif discovery 2021 · 335 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2021 Bioinformatics
2015 Nucleic Acids Research
2013 Molecular Cell
2011 Bioinformatics
2011 Bioinformatics
2011 Bioinformatics
2009 Nucleic Acids Research
2007 Genome biology
2006 Nucleic Acids Research

Peers

Countries citing papers authored by Timothy L. Bailey

Since Specialization

Citations

This map shows the geographic impact of Timothy L. Bailey's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Timothy L. Bailey with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Timothy L. Bailey more than expected).

Fields of papers citing papers by Timothy L. Bailey

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Timothy L. Bailey. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Timothy L. Bailey. The network helps show where Timothy L. Bailey may publish in the future.

Co-authors

The 25 scholars most cited alongside Timothy L. Bailey, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Timothy L. Bailey Line = papers co-authored together Timothy L. Bailey links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet Genome biology ·Coby Viner, Charles A. Ishak, James Johnson, Nicolas J. Walker, Hui Shi, Marcela Sjöberg, Shu Yi Shen, Monserrat Salvá Catarineu, David J. Adams, Anne C. Ferguson‐Smith, Daniel D. De Carvalho, Sarah J. Hainer, Timothy L. Bailey, Michael M. Hoffman	2024	8
2	STREME: accurate and versatile sequence motif discovery Bioinformatics ·Timothy L. Bailey Hit paper breakdown →	2021	335
3	T-Gene: improved target gene prediction Bioinformatics ·Timothy O’Connor, Charles E. Grant, Mikael Bodén, Timothy L. Bailey	2020	13
4	MoMo: discovery of statistically significant post-translational modification motifs Bioinformatics ·Alice Cheng, Charles E. Grant, William Stafford Noble, Timothy L. Bailey	2018	142
5	Krüppel-like factors compete for promoters and enhancers to fine-tune transcription Nucleic Acids Research ·XianLi Meng, Kevin R. Gillinder, Graham Magor, Stephen Huang, Timothy L. Bailey, Merlin Crossley, Andrew C. Perkins	2017	42
6	Promiscuous DNA-binding of a mutant zinc finger protein corrupts the transcriptome and diminishes cell viability Nucleic Acids Research ·Kevin R. Gillinder, XianLi Meng, Danitza Nébor, Ravi Sachidanandam, Mathieu Lajoie, Graham Magor, Michael R. Tallack, Timothy L. Bailey, Michael J. Landsberg, Joel P. Mackay, Michael W. Parker, Luke A. Miles, Joel H. Graber, Luanne L. Peters, James J. Bieker, Andrew C. Perkins	2016	34
7	The MEME Suite Nucleic Acids Research ·Timothy L. Bailey, James Johnson, Charles E. Grant, William Stafford Noble Hit paper breakdown →	2015	3018
8	Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species BMC Developmental Biology ·Teija Suuniittu, Timothy L. Bailey, Peter Koopman	2015	5
9	NFIB-mediated repression of the epigenetic factor Ezh2 regulates cortical development Queensland's institutional digital repository (The University of Queensland) ·Michael Piper, Guy Barry, Tracey J. Harvey, Robert C. McLeay, Aaron G. Smith, Lachlan Harris, Sharon Mason, Brett W. Stringer, Bryan W. Day, Naomi R. Wray, Richard M. Gronostajski, Timothy L. Bailey, Andy Boyd, Linda J. Richards	2014	3
10	Stromal Platelet-Derived Growth Factor Receptor α (PDGFRα) Provides a Therapeutic Target Independent of Tumor Cell PDGFRα Expression in Lung Cancer Xenografts Molecular Cancer Therapeutics ·David E. Gerber, Puja Gupta, Michael T. Dellinger, Jason E. Toombs, Michael Peyton, Inga Duignan, L NORO, Timothy L. Bailey, A. Kartakoulis, Rolf A. Brekken, Nick Loizos	2012	35
11	Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq Genome Research ·Michael R. Tallack, Graham Magor, Benjamin Dartigues, Lei Sun, Stephen Huang, Pierluigi Ipponi, Ezlina Usir, Evgeny A. Glazov, Timothy L. Bailey, Andrew C. Perkins	2012	81
12	Tissue-specific prediction of directly regulated genes Bioinformatics ·Robert C. McLeay, Shaobo Guo, Timothy L. Bailey	2011	7
13	MEME-ChIP: motif analysis of large DNA datasets Bioinformatics ·Philip Machanick, Timothy L. Bailey Hit paper breakdown →	2011	1292
14	NFIA Controls Telencephalic Progenitor Cell Differentiation through Repression of the Notch Effector Hes1 Journal of Neuroscience ·Michael Piper, Guy Barry, John Hawkins, Sharon Mason, Charlotta Lindwall, Elizabeth Little, Anindita Sarkar, Aaron G. Smith, Randal X. Moldrich, Glen M. Boyle, Shubha Tole, Richard M. Gronostajski, Timothy L. Bailey, Linda J. Richards	2010	115
15	Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data BMC Bioinformatics ·Robert C. McLeay, Timothy L. Bailey	2010	453
16	MEME SUITE: tools for motif discovery and searching Nucleic Acids Research ·Timothy L. Bailey, Mikael Bodén, Fabian A. Buske, Martin C. Frith, Charles E. Grant, Luca Clementi, Junxiao Ren, Wen‐Wu Li, William Stafford Noble Hit paper breakdown →	2009	7542
17	Discovering Sequence Motifs with Arbitrary Insertions and Deletions PLoS Computational Biology ·Martin C. Frith, Neil Saunders, Boštjan Kobe, Timothy L. Bailey	2008	269
18	Hidden Markov Model Analysis of Motifs in Steroid Dehydrogenases and Their Homologs Biochemical and Biophysical Research Communications ·William Noble Grundy, Timothy L. Bailey, Charles Elkan, Michael E. Baker	1997	32
19	Score Distributions for Simultaneous Matching to Multiple Motifs Journal of Computational Biology ·Timothy L. Bailey, Michael Gribskov	1997	48
20	Estimating the accuracy of learned concepts International Joint Conference on Artificial Intelligence ·Timothy L. Bailey, Charles Elkan	1993	23

About Timothy L. Bailey

Timothy L. Bailey is a scholar working on Developmental Neuroscience, Molecular Biology, Cancer Research, Genetics and Cellular and Molecular Neuroscience, having authored 102 papers that have together received 26.0k indexed citations. Recurring topics across this work include Genomics and Chromatin Dynamics (45 papers), RNA and protein synthesis mechanisms (34 papers), Genomics and Phylogenetic Studies (27 papers), RNA Research and Splicing (19 papers), Machine Learning in Bioinformatics (14 papers), Gene expression and cancer classification (14 papers), Epigenetics and DNA Methylation (13 papers) and RNA modifications and cancer (9 papers). The work is most often cited by research in Molecular Biology (20.2k citations), Plant Science (8.3k citations), Aging (277 citations), Cancer Research (2.1k citations) and Genetics (3.1k citations). Timothy L. Bailey has collaborated with scholars based in Australia, United States and United Kingdom. Frequent co-authors include William Stafford Noble, Charles E. Grant, Wen‐Wu Li, Fabian A. Buske, Martin C. Frith, Mikael Bodén, Junxiao Ren, Luca Clementi, Philip Machanick and James Johnson. Their work appears in journals such as Bioinformatics, Nucleic Acids Research, BMC Bioinformatics, Journal of Computational Biology and Genome Research.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact