Shiro Yui

2.6k total citations · 2 hit papers
21 papers, 1.8k citations indexed

About

Shiro Yui is a scholar working on Oncology, Genetics and Surgery. According to data from OpenAlex, Shiro Yui has authored 21 papers receiving a total of 1.8k indexed citations (citations by other indexed papers that have themselves been cited), including 15 papers in Oncology, 11 papers in Genetics and 5 papers in Surgery. Recurrent topics in Shiro Yui's work include Cancer Cells and Metastasis (12 papers), Digestive system and related health (10 papers) and Cancer Research and Treatments (3 papers). Shiro Yui is often cited by papers focused on Cancer Cells and Metastasis (12 papers), Digestive system and related health (10 papers) and Cancer Research and Treatments (3 papers). Shiro Yui collaborates with scholars based in Japan, Denmark and United Kingdom. Shiro Yui's co-authors include Mamoru Watanabe, Tetsuya Nakamura, Ryuichi Okamoto, Kiichiro Tsuchiya, Kim B. Jensen, Tomohiro Mizutani, Yasuhiro Nemoto, Takashi Nagaishi, Xiu Zheng and Hans Clevers and has published in prestigious journals such as Nature, Nature Medicine and Gastroenterology.

In The Last Decade

Shiro Yui

20 papers receiving 1.8k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Functional engraftment of colon epithelium expanded in vitro from a single adult Lgr5+ stem cell

2012 627 citations Shiro Yui, Tetsuya Nakamura et al. Nature Medicine profile →
YAP/TAZ-Dependent Reprogramming of Colonic Epithelium Links ECM Remodeling to Tissue Regeneration

2017 439 citations Shiro Yui, Luca Azzolin et al. Cell stem cell profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Shiro Yui Japan	12	925	781	511	418	313	21	1.8k
Elizabeth E. Hoskins United States	14	718 0.8×	1.3k 1.6×	310 0.6×	577 1.4×	362 1.2×	16	2.0k
Femke Ringnalda Netherlands	12	730 0.8×	1.1k 1.3×	356 0.7×	523 1.3×	460 1.5×	16	2.0k
Francisco M. Barriga United States	15	1.3k 1.4×	1.1k 1.4×	419 0.8×	282 0.7×	177 0.6×	29	2.3k
Shaun Walsh United States	14	458 0.5×	855 1.1×	252 0.5×	201 0.5×	338 1.1×	24	2.2k
Fatima El Marjou France	17	769 0.8×	1.5k 1.9×	499 1.0×	136 0.3×	256 0.8×	23	2.5k
Yana Zavros United States	21	606 0.7×	998 1.3×	251 0.5×	378 0.9×	520 1.7×	44	1.8k
Shoichi Date Japan	7	1.5k 1.6×	1.1k 1.4×	306 0.6×	625 1.5×	165 0.5×	8	2.3k
Nambirajan Sundaram United States	13	518 0.6×	639 0.8×	235 0.5×	451 1.1×	398 1.3×	18	1.5k
Karien M. Hamer Netherlands	19	828 0.9×	2.4k 3.1×	484 0.9×	468 1.1×	766 2.4×	22	3.7k
Matthew Kuhar United States	7	541 0.6×	869 1.1×	262 0.5×	577 1.4×	418 1.3×	16	1.6k

Countries citing papers authored by Shiro Yui

Since Specialization

Citations

This map shows the geographic impact of Shiro Yui's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Shiro Yui with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Shiro Yui more than expected).

Fields of papers citing papers by Shiro Yui

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Shiro Yui. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Shiro Yui. The network helps show where Shiro Yui may publish in the future.

Co-authorship network of co-authors of Shiro Yui

This figure shows the co-authorship network connecting the top 25 collaborators of Shiro Yui. A scholar is included among the top collaborators of Shiro Yui based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Shiro Yui. Shiro Yui is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Kirino, Sakura, et al.. (2026). Fetal reversion from diverse lineages sustains the intestinal stem cell pool and confers stress resilience. Communications Biology. 9(1). 255–255.

Kano, Yoshihito, Yosuke Yoneyama, Satoshi Watanabe, et al.. (2024). Discovery of non-genomic drivers of YAP signaling modulating the cell plasticity in CRC tumor lines. iScience. 27(3). 109247–109247. 3 indexed citations

Watanabe, Satoshi, Sakura Kirino, Sayaka Nagata, et al.. (2023). Organoids transplantation as a new modality to design epithelial signature to create a membrane-protective sulfomucin-enriched segment. Journal of Gastroenterology. 58(4). 379–393. 8 indexed citations

Kato, Yusuke, Mutsumi Yokota, Masato Koike, et al.. (2023). The Effect of Vitamin D3 and Valproic Acid on the Maturation of Human-Induced Pluripotent Stem Cell-Derived Enterocyte-Like Cells. Stem Cells. 41(8). 775–791. 5 indexed citations

Watanabe, Satoshi, Ryuichi Okamoto, Tetsuya Nakamura, et al.. (2022). Transplantation of intestinal organoids into a mouse model of colitis. Nature Protocols. 17(3). 649–671. 85 indexed citations

Schweiger, Pawel J., et al.. (2022). Extracellular Matrix Interactions Provide Tumor Cells With an Escape Mechanism for Commitment to Differentiation. Gastroenterology. 163(6). 1688–1690.e3. 3 indexed citations

Kuno, Reiko, Go Ito, Ami Kawamoto, et al.. (2021). Notch and TNF-α signaling promote cytoplasmic accumulation of OLFM4 in intestinal epithelium cells and exhibit a cell protective role in the inflamed mucosa of IBD patients. Biochemistry and Biophysics Reports. 25. 100906–100906. 12 indexed citations

Ito, Go, Sayaka Nagata, Ami Kawamoto, et al.. (2021). Functional analysis of isoflavones using patient-derived human colonic organoids. Biochemical and Biophysical Research Communications. 542. 40–47. 5 indexed citations

Kawamoto, Ami, Sayaka Nagata, Junichi Takahashi, et al.. (2020). TGF-β promotes fetal gene expression and cell migration velocity in a wound repair model of untransformed intestinal epithelial cells. Biochemical and Biophysical Research Communications. 524(3). 533–541. 9 indexed citations

10.

Okamoto, Ryuichi, Hiromichi Shimizu, Kohei Suzuki, et al.. (2020). Organoid-based regenerative medicine for inflammatory bowel disease. Regenerative Therapy. 13. 1–6. 48 indexed citations

11.

Guiu, Jordi, Édouard Hannezo, Shiro Yui, et al.. (2019). Tracing the origin of adult intestinal stem cells. Nature. 570(7759). 107–111. 115 indexed citations

12.

Kawamoto, Ami, Sayaka Nagata, Junichi Takahashi, et al.. (2018). Ubiquitin D is Upregulated by Synergy of Notch Signalling and TNF-α in the Inflamed Intestinal Epithelia of IBD Patients. Journal of Crohn s and Colitis. 13(4). 495–509. 29 indexed citations

13.

Yui, Shiro, Luca Azzolin, Martti Maimets, et al.. (2017). YAP/TAZ-Dependent Reprogramming of Colonic Epithelium Links ECM Remodeling to Tissue Regeneration. Cell stem cell. 22(1). 35–49.e7. 439 indexed citations breakdown →

14.

Tsuchiya, Kiichiro, Ryohei Hayashi, K Fukushima, et al.. (2014). Fluorescent labelling of intestinal epithelial cells reveals independent long-lived intestinal stem cells in a crypt. Biochemical and Biophysical Research Communications. 454(4). 493–499. 8 indexed citations

15.

Ito, Go, Ryuichi Okamoto, Tatsuro Murano, et al.. (2013). Lineage-Specific Expression of Bestrophin-2 and Bestrophin-4 in Human Intestinal Epithelial Cells. PLoS ONE. 8(11). e79693–e79693. 39 indexed citations

16.

Fordham, Robert, Shiro Yui, Nicholas R. F. Hannan, et al.. (2013). Transplantation of Expanded Fetal Intestinal Progenitors Contributes to Colon Regeneration after Injury. Cell stem cell. 13(6). 734–744. 315 indexed citations

17.

Murano, Tatsuro, Ryuichi Okamoto, Go Ito, et al.. (2013). Hes1 promotes the IL-22-mediated antimicrobial response by enhancing STAT3-dependent transcription in human intestinal epithelial cells. Biochemical and Biophysical Research Communications. 443(3). 840–846. 39 indexed citations

18.

Yui, Shiro, Tetsuya Nakamura, Toshiro Sato, et al.. (2012). Functional engraftment of colon epithelium expanded in vitro from a single adult Lgr5+ stem cell. Nature Medicine. 18(4). 618–623. 627 indexed citations breakdown →

19.

Mizutani, Tomohiro, Tetsuya Nakamura, Masayoshi Fukuda, et al.. (2012). Real-time analysis of P-glycoprotein-mediated drug transport across primary intestinal epithelium three-dimensionally cultured in vitro. Biochemical and Biophysical Research Communications. 419(2). 238–243. 41 indexed citations

20.

Okamoto, Ryuichi, Michiko Iwasaki, Xiu Zheng, et al.. (2010). Delta-like 1 expression promotes goblet cell differentiation in Notch-inactivated human colonic epithelial cells. Biochemical and Biophysical Research Communications. 393(4). 662–667. 18 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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