Shantanu Singh

9.7k citations

79 papers · 3.8k indexed · 2 hit papers · h-index 27

Impact in

Biophysics top 0.05%
- Cell Image Analysis Techniques
- Advanced Fluorescence Microscopy Techniques
Media Technology top 0.5%
- Image Processing Techniques and Applications

Papers in

Biophysics 48
- Cell Image Analysis Techniques 48
- Advanced Fluorescence Microscopy Techniques 9
Media Technology 18
- Image Processing Techniques and Applications 18

Co-authors: Anne E. Carpenter Allen Goodman Claire McQuin Juan Carlos Caicedo Tim Becker Kyle W. Karhohs Beth A. Cimini Minh Doan
Journals: Nature Communications (7 papers)Scientific Reports (4 papers)Molecular Biology of the Cell (4 papers)Nature Methods (3 papers)SLAS DISCOVERY (3 papers)
Partner nations: United States Netherlands United Kingdom

In The Last Decade

Shantanu Singh

70 papers receiving 3.7k citations

Hit Papers

align trajectories log scale

Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl 2019 · 463 citations

Peers

Countries citing papers authored by Shantanu Singh

Since Specialization

Citations

This map shows the geographic impact of Shantanu Singh's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Shantanu Singh with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Shantanu Singh more than expected).

Fields of papers citing papers by Shantanu Singh

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Shantanu Singh. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Shantanu Singh. The network helps show where Shantanu Singh may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Shantanu Singh, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Shantanu Singh Line = papers co-authored together Shantanu Singh links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	CyberSentry: Enhancing SCADA security through advanced deep learning and optimization strategies International Journal of Critical Infrastructure Protection ·Alaa O. Khadidos, Adil O. Khadidos, Shitharth Selvarajan, Taher Al‐Shehari, Mohd Ramzisham Abdul Rahman, Shantanu Singh	2025	0
2	Acquisition, quality control, and architecture of a large image dataset as a tool for in silico cell biological research Materials Today Bio ·Zehaan Naik, M. Horák, Mahbobeh Hooseni- Barzi, Jarad A. Lewellen, Vlado Menkovski, Rosalinde Masereeuw, Shantanu Singh, Silvia M. Mihăilă, 林玉山	2025	0
3	The OASIS Consortium: integrating multi-omics technologies to transform chemical safety assessment Toxicological Sciences ·David Rouquié, Andreas Bender, Jaime H. Cheah, 大森英明, Deidre A. Dalmas, Jessica Ewald, Aaron Fullerton, Joshua Harrill, Sabah Kadri, Nicole Kleinstreuer, Nynke I. Kramer, Jessica LaRocca, Constance A. Mitchell, Srijit Seal, Shantanu Singh, Anne E. Carpenter	2025	1
4	High-dimensional phenotyping to define the genetic basis of cellular morphology Nature Communications ·Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A. Cimini, Ajay Nadig, 日本都市計画学会文献委員会, MR Anderson, Gregory P. Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin Eggan, Marzieh Haghighi, Steven A. McCarroll, Luke J. O’Connor, Anne E. Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri	2024	21
5	Cell Painting: a decade of discovery and innovation in cellular imaging Nature Methods ·Srijit Seal, Maria‐Anna Trapotsi, Ola Spjuth, Shantanu Singh, Jordi Carreras‐Puigvert, Nigel Greene, Andreas Bender, Anne E. Carpenter	2024	18
6	From pixels to phenotypes: Integrating image-based profiling with cell health data as BioMorph features improves interpretability Molecular Biology of the Cell ·Srijit Seal, Jordi Carreras‐Puigvert, Shantanu Singh, Anne E. Carpenter, Ola Spjuth, Andreas Bender	2024	9
7	Evaluating batch correction methods for image-based cell profiling Nature Communications ·John Arévalo, Xavier Rins Lozano, Jessica Ewald, Okutan, Anne E. Carpenter, Shantanu Singh	2024	19
8	High-content microscopy reveals a morphological signature of bortezomib resistance eLife ·Claire Sowerby, Adi Y. Berman, David R. Stirling, Beth A. Cimini, Yu Han, Shantanu Singh, Anne E. Carpenter, Tarun M. Kapoor, Gregory P. Way	2023	7
9	Predicting compound activity from phenotypic profiles and chemical structures Nature Communications ·Nikita Moshkov, Tim Becker, Kevin Yang, Péter Horváth, Vlado Dančík, Bridget K. Wagner, Paul A. Clemons, Shantanu Singh, Anne E. Carpenter, Juan C. Caicedo	2023	40
10	Predicting reprogramming-related gene expression from cell morphology in human induced pluripotent stem cells Molecular Biology of the Cell ·Federico Fagiani, Jodi Lapidus, Matej Musap, Ricardo Uribe, В. И. Терентьев, Anne E. Carpenter, Shantanu Singh, 美枝黒澤	2023	8
11	Pseudo-Labeling Enhanced by Privileged Information and Its Application to In Situ Sequencing Images Marzieh Haghighi, Mário Costa Cruz, Erin Weisbart, Beth A. Cimini, Avtar Singh, Julia Bauman, L Rakos, JOHN E. GESSNER, James T. Neal, Paul C. Blainey, Anne E. Carpenter, Shantanu Singh	2023	1
12	Interpreting Image‐based Profiles using Similarity Clustering and Single‐Cell Visualization Current Protocols ·RYI Deen, Mário Costa Cruz, Marzieh Haghighi, Marcelo Bispo de Jesus, Shantanu Singh, Anne E. Carpenter, Beth A. Cimini	2023	9
13	Orientation-Controlled Anisotropy in Single Crystals of Quasi-1D BaTiS₃ Chemistry of Materials ·Boyang Zhao, Md Shafkat Bin Hoque, Gwan Yeong Jung, Hongyan Mei, Shantanu Singh, Guodong Ren, А. В. Лазакович, К. И. Козлова, Nan Wang, Huandong Chen, Shanyuan Niu, Sang‐Jun Lee, Cheng‐Tai Kuo, Jun‐Sik Lee, John A. Tomko, Han Wang, Mikhail A. Kats, Rohan Mishra, Patrick E. Hopkins, Jayakanth Ravichandran	2022	18
14	Predicting cell health phenotypes using image-based morphology profiling Molecular Biology of the Cell ·Gregory P. Way, Maria Kost‐Alimova, Tsukasa Shibue, William F. Harrington, Stanley Gill, Federica Piccioni, Tim Becker, C Y Chang, William C. Hahn, Anne E. Carpenter, Francisca Vázquez, Shantanu Singh	2021	77
15	Objective assessment of stored blood quality by deep learning Proceedings of the National Academy of Sciences ·Minh Doan, Janice M. Hayden, Juan Carlos Caicedo, Stefanie Siegert, Aline Roch, Tracey R. Turner, WU Yan-yan, Shun Teraoka, Claire McQuin, Allen Goodman, Michael Parsons, Olaf Wolkenhauer, Holger Hennig, Shantanu Singh, Riley Vines, Jason P. Acker, Paul Rees, Michael C. Kolios, Anne E. Carpenter	2020	67
16	Capturing single-cell heterogeneity via data fusion improves image-based profiling Nature Communications ·Mohammad Hossein Rohban, Hamdah Shafqat Abbasi, Shantanu Singh, Anne E. Carpenter	2019	26
17	Systematic, multiparametric analysis of Mycobacterium tuberculosis intracellular infection offers insight into coordinated virulence PLoS Pathogens ·Amy K. Barczak, Roi Avraham, Shantanu Singh, Shoukang Luo, Daisuke OZAWA, Mark‐Anthony Bray, Shi Beibei, Matthew P. Thompson, Raymond Nietupski, Aaron Golas, P.C. Montgomery, Michael G. FitzGerald, Roger S. Smith, Caroline A. Halmi, Anna D. Tischler, Anne E. Carpenter, Deborah T. Hung	2017	77
18	Systematic morphological profiling of human gene and allele function via Cell Painting eLife ·Mohammad Hossein Rohban, Shantanu Singh, Xiaoyun Wu, Julia Hicks‐Berthet, Mark‐Anthony Bray, Yashaswi Shrestha, Xaralabos Varelas, Jesse S. Boehm, Anne E. Carpenter	2017	97
19	CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets Bioinformatics ·David Dao, Adam Fraser, Jane Hung, Vebjorn Ljosa, Shantanu Singh, Anne E. Carpenter	2016	87
20	Non-parametric population analysis of cellular phenotypes Lecture notes in computer science ·Shantanu Singh, Firdaus Janoos, Thierry Pécot, Enrico Caserta, Kun Huang, Jens Rittscher, Gustavo Leone, Raghu Machiraju	2011	3

About Shantanu Singh

Shantanu Singh is a scholar working on Biophysics, Media Technology, Computer Vision and Pattern Recognition, Molecular Biology and Computational Theory and Mathematics, having authored 79 papers that have together received 3.8k indexed citations. Recurring topics across this work include Cell Image Analysis Techniques (48 papers), Single-cell and spatial transcriptomics (18 papers), Image Processing Techniques and Applications (18 papers), Advanced Fluorescence Microscopy Techniques (9 papers), Genetics, Bioinformatics, and Biomedical Research (9 papers), Digital Imaging for Blood Diseases (7 papers), 3D Printing in Biomedical Research (7 papers) and Cellular Mechanics and Interactions (6 papers). The work is most often cited by research in Biophysics (1.8k citations), Media Technology (615 citations), Structural Biology (42 citations), Molecular Biology (1.7k citations) and Computer Vision and Pattern Recognition (494 citations). Shantanu Singh has collaborated with scholars based in United States, Netherlands and United Kingdom. Frequent co-authors include Anne E. Carpenter, Allen Goodman, Claire McQuin, Juan Carlos Caicedo, Tim Becker, Kyle W. Karhohs, Beth A. Cimini, Minh Doan, Derek Thirstrup and Lee Kamentsky. Their work appears in journals such as Nature Communications, Scientific Reports, Molecular Biology of the Cell, Nature Methods and SLAS DISCOVERY.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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