Saket Choudhary

5.8k total citations · 2 hit papers
20 papers, 1.9k citations indexed

About

Saket Choudhary is a scholar working on Molecular Biology, Infectious Diseases and Epidemiology. According to data from OpenAlex, Saket Choudhary has authored 20 papers receiving a total of 1.9k indexed citations (citations by other indexed papers that have themselves been cited), including 11 papers in Molecular Biology, 5 papers in Infectious Diseases and 5 papers in Epidemiology. Recurrent topics in Saket Choudhary's work include Antifungal resistance and susceptibility (4 papers), Fungal Infections and Studies (4 papers) and RNA Research and Splicing (4 papers). Saket Choudhary is often cited by papers focused on Antifungal resistance and susceptibility (4 papers), Fungal Infections and Studies (4 papers) and RNA Research and Splicing (4 papers). Saket Choudhary collaborates with scholars based in United States, India and Australia. Saket Choudhary's co-authors include Rahul Satija, Austin Hartman, Madeline H. Kowalski, Yuhan Hao, Paul Hoffman, Carlos Fernandez‐Granda, Gesmira Molla, Avi Srivastava, Tim Stuart and Andrew D. Smith and has published in prestigious journals such as Cell, Nature Biotechnology and Bioinformatics.

In The Last Decade

Saket Choudhary

19 papers receiving 1.9k citations

Hit Papers

align trajectories sort by overperformance

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Dictionary learning for integrative, multimodal and scalable single-cell analysis

2023 1.3k citations Yuhan Hao, Tim Stuart et al. Nature Biotechnology profile →
Comparison and evaluation of statistical error models for scRNA-seq

2022 237 citations Saket Choudhary, Rahul Satija Genome biology profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Saket Choudhary United States	12	1.1k	443	227	225	161	20	1.9k
Austin Hartman United States	5	803 0.8×	339 0.8×	173 0.8×	181 0.8×	136 0.8×	9	1.4k
Hannah W. Miller United States	10	1.1k 1.0×	673 1.5×	304 1.3×	231 1.0×	101 0.6×	11	1.9k
Bram Van de Sande Belgium	11	1.2k 1.2×	418 0.9×	292 1.3×	275 1.2×	176 1.1×	11	2.0k
Kelly Street United States	11	1.5k 1.4×	589 1.3×	329 1.4×	263 1.2×	117 0.7×	15	2.3k
Chloe K. Slichter United States	10	1.1k 1.0×	735 1.7×	307 1.4×	222 1.0×	98 0.6×	10	2.0k
Avi Srivastava United States	14	1.8k 1.7×	559 1.3×	428 1.9×	251 1.1×	180 1.1×	24	2.7k
Diya Das United States	6	1.1k 1.1×	499 1.1×	257 1.1×	228 1.0×	103 0.6×	7	1.8k
Jingyuan Deng United States	12	1.4k 1.3×	545 1.2×	430 1.9×	208 0.9×	100 0.6×	23	2.2k
Bhakti Dwivedi United States	18	696 0.7×	545 1.2×	180 0.8×	432 1.9×	156 1.0×	52	1.7k
Robrecht Cannoodt Belgium	10	1.9k 1.8×	561 1.3×	403 1.8×	237 1.1×	123 0.8×	20	2.5k

Countries citing papers authored by Saket Choudhary

Since Specialization

Citations

This map shows the geographic impact of Saket Choudhary's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Saket Choudhary with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Saket Choudhary more than expected).

Fields of papers citing papers by Saket Choudhary

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Saket Choudhary. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Saket Choudhary. The network helps show where Saket Choudhary may publish in the future.

Co-authorship network of co-authors of Saket Choudhary

This figure shows the co-authorship network connecting the top 25 collaborators of Saket Choudhary. A scholar is included among the top collaborators of Saket Choudhary based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Saket Choudhary. Saket Choudhary is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Mundodi, Vasanthakrishna, Saket Choudhary, Andrew D. Smith, & David Kadosh. (2025). Ribosome profiling reveals differences in global translational vs transcriptional gene expression changes during early Candida albicans biofilm formation. Microbiology Spectrum. 13(3). e0219524–e0219524. 2 indexed citations

Kowalski, Madeline H., Hans‐Hermann Wessels, Johannes Linder, et al.. (2024). Multiplexed single-cell characterization of alternative polyadenylation regulators. Cell. 187(16). 4408–4425.e23. 18 indexed citations

Choudhary, Saket, Vasanthakrishna Mundodi, Andrew D. Smith, & David Kadosh. (2024). Correction for Choudhary et al., “Genome-wide translational response of Candida albicans to fluconazole treatment”. Microbiology Spectrum. 12(5). e0067824–e0067824.

Hao, Yuhan, Tim Stuart, Madeline H. Kowalski, et al.. (2023). Dictionary learning for integrative, multimodal and scalable single-cell analysis. Nature Biotechnology. 42(2). 293–304. 1325 indexed citations breakdown →

Choudhary, Saket, Vasanthakrishna Mundodi, Andrew D. Smith, & David Kadosh. (2023). Genome-wide translational response of Candida albicans to fluconazole treatment. Microbiology Spectrum. 11(5). e0257223–e0257223. 5 indexed citations

Choudhary, Saket & Rahul Satija. (2022). Comparison and evaluation of statistical error models for scRNA-seq. Genome biology. 23(1). 27–27. 237 indexed citations breakdown →

Choudhary, Saket, Xiufen Lei, Adam Kosti, et al.. (2021). Musashi1 Contribution to Glioblastoma Development via Regulation of a Network of DNA Replication, Cell Cycle and Division Genes. Cancers. 13(7). 1494–1494. 11 indexed citations

Choudhary, Saket, Suzanne Perea Burns, Wenzheng Li, et al.. (2020). Genomic analyses of early responses to radiation in glioblastoma reveal new alterations at transcription, splicing, and translation levels. Scientific Reports. 10(1). 8979–8979. 13 indexed citations

Choudhary, Saket, Suzanne Perea Burns, Wenzheng Li, et al.. (2020). Publisher Correction: Genomic analyses of early responses to radiation in glioblastoma reveal new alterations at transcription, splicing, and translation levels. Scientific Reports. 10(1). 13399–13399. 4 indexed citations

10.

Choudhary, Saket, et al.. (2020). Watershed prioritization for soil conservation measures using USPED model in Nagwan Watershed. Journal of Soil and Water Conservation. 19(3). 235–235. 1 indexed citations

11.

Choudhary, Saket, et al.. (2020). A Protein Microarray-Based Investigation of Cerebrospinal Fluid Reveals Distinct Autoantibody Signature in Low and High-Grade Gliomas. Frontiers in Oncology. 10. 543947–543947. 9 indexed citations

12.

Mundodi, Vasanthakrishna, Saket Choudhary, Andrew D. Smith, & David Kadosh. (2020). Global translational landscape of the Candida albicans morphological transition. G3 Genes Genomes Genetics. 11(2). 15 indexed citations

13.

Lee, Juhye, Rachel Eguia, Seth J. Zost, et al.. (2019). Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin. eLife. 8. 61 indexed citations

14.

Choudhary, Saket, et al.. (2019). Effect of welding parameters on microstructure and mechanical properties of friction stir welded Al 6061 aluminum alloy joints. Materials Today Proceedings. 25. 563–569. 14 indexed citations

15.

Choudhary, Saket, Wenzheng Li, & Andrew D. Smith. (2019). Accurate detection of short and long active ORFs using Ribo-seq data. Bioinformatics. 36(7). 2053–2059. 37 indexed citations

16.

Choudhary, Saket, Namrata Singh, Heng Zhu, et al.. (2017). Evaluation of autoantibody signatures in meningioma patients using human proteome arrays. Oncotarget. 8(35). 58443–58456. 20 indexed citations

17.

Rahman, Syed Asad, Sergio Martínez Cuesta, Franz Fenninger, et al.. (2016). Reaction Decoder Tool (RDT): extracting features from chemical reactions. Bioinformatics. 32(13). 2065–2066. 71 indexed citations

18.

Choudhary, Saket, Heng Zhu, Sridhar Epari, et al.. (2015). Autoantibody Profiling of Glioma Serum Samples to Identify Biomarkers Using Human Proteome Arrays. Scientific Reports. 5(1). 13895–13895. 37 indexed citations

19.

Choudhary, Saket, et al.. (2013). Scilab on Cloud and Textbook Companion Project: A Web 2.0 Service for Open Source Education. 438–443. 1 indexed citations

20.

Choudhary, Saket, et al.. (2013). Oscad: An open source EDA tool for circuit design, simulation, analysis and PCB design. 851–854. 7 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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