Tim Stuart

42.3k total citations · 4 hit papers
18 papers, 11.4k citations indexed

About

Tim Stuart is a scholar working on Molecular Biology, Plant Science and Cancer Research. According to data from OpenAlex, Tim Stuart has authored 18 papers receiving a total of 11.4k indexed citations (citations by other indexed papers that have themselves been cited), including 16 papers in Molecular Biology, 5 papers in Plant Science and 3 papers in Cancer Research. Recurrent topics in Tim Stuart's work include Single-cell and spatial transcriptomics (10 papers), Genomics and Chromatin Dynamics (4 papers) and Epigenetics and DNA Methylation (3 papers). Tim Stuart is often cited by papers focused on Single-cell and spatial transcriptomics (10 papers), Genomics and Chromatin Dynamics (4 papers) and Epigenetics and DNA Methylation (3 papers). Tim Stuart collaborates with scholars based in United States, Australia and Singapore. Tim Stuart's co-authors include Rahul Satija, Yuhan Hao, Paul Hoffman, William M. Mauck, Peter Smibert, Andrew Butler, Efthymia Papalexi, Marlon Stoeckius, Christoph Hafemeister and Avi Srivastava and has published in prestigious journals such as Cell, Nature Biotechnology and Nature Cell Biology.

In The Last Decade

Tim Stuart

16 papers receiving 11.4k citations

Hit Papers

Comprehensive Integration of Single-Cell Data 2019 2026 2021 2023 2019 2023 2019 2021 2.5k 5.0k 7.5k
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. Comprehensive Integration of Single-Cell Data
    2019 7.9k citations Tim Stuart, Andrew Butler et al. Cell profile →
  2. Dictionary learning for integrative, multimodal and scalable single-cell analysis
    2023 1.3k citations Yuhan Hao, Tim Stuart et al. Nature Biotechnology profile →
  3. Integrative single-cell analysis
    2019 872 citations Tim Stuart, Rahul Satija Nature Reviews Genetics profile →
  4. Single-cell chromatin state analysis with Signac
    2021 673 citations Tim Stuart, Avi Srivastava et al. Nature Methods profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Tim Stuart United States 14 7.4k 3.2k 1.7k 1.5k 822 18 11.4k
Marlon Stoeckius United States 18 7.9k 1.1× 3.5k 1.1× 1.8k 1.1× 1.6k 1.1× 701 0.9× 22 11.7k
Yuhan Hao United States 19 6.3k 0.8× 3.0k 0.9× 1.5k 0.9× 1.5k 1.0× 829 1.0× 38 10.4k
Christoph Hafemeister United States 12 8.4k 1.1× 3.9k 1.2× 1.8k 1.1× 1.7k 1.2× 821 1.0× 19 12.7k
William M. Mauck United States 17 6.1k 0.8× 2.8k 0.9× 1.3k 0.8× 1.3k 0.9× 657 0.8× 24 9.5k
Stein Aerts Belgium 45 8.3k 1.1× 2.3k 0.7× 2.0k 1.2× 1.9k 1.3× 791 1.0× 101 11.7k
Xiaojie Qiu United States 16 5.8k 0.8× 2.0k 0.6× 1.3k 0.8× 1.0k 0.7× 543 0.7× 23 8.2k
Andrew Butler United States 10 10.4k 1.4× 5.2k 1.6× 2.5k 1.5× 2.3k 1.6× 1.3k 1.5× 12 16.1k
Orit Rozenblatt–Rosen United States 41 6.7k 0.9× 2.5k 0.8× 1.9k 1.1× 3.1k 2.1× 667 0.8× 61 11.1k
Efthymia Papalexi United States 9 10.6k 1.4× 5.5k 1.7× 2.5k 1.5× 2.4k 1.7× 1.3k 1.6× 12 16.5k
Itay Tirosh Israel 34 8.0k 1.1× 1.8k 0.6× 2.2k 1.3× 1.9k 1.3× 449 0.5× 65 10.7k

Countries citing papers authored by Tim Stuart

Since Specialization
Citations

This map shows the geographic impact of Tim Stuart's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tim Stuart with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tim Stuart more than expected).

Fields of papers citing papers by Tim Stuart

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tim Stuart. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tim Stuart. The network helps show where Tim Stuart may publish in the future.

Co-authorship network of co-authors of Tim Stuart

This figure shows the co-authorship network connecting the top 25 collaborators of Tim Stuart. A scholar is included among the top collaborators of Tim Stuart based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Tim Stuart. Tim Stuart is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

18 of 18 papers shown
1.
Stuart, Tim, et al.. (2025). Cis-regulatory elements at cellular resolution. Nature Reviews Genetics. 26(10). 653–654.
2.
Stuart, Tim. (2024). Progress in multifactorial single-cell chromatin profiling methods. Biochemical Society Transactions. 52(4). 1827–1839.
3.
Liew, Lim Chee, Yue You, Marina Oliva, et al.. (2024). Establishment of single-cell transcriptional states during seed germination. Nature Plants. 10(9). 1418–1434. 20 indexed citations
4.
Stuart, Tim, Sam Buckberry, Trung Viet Nguyen, & Ryan Lister. (2024). Approaches for the Analysis and Interpretation of Whole-Genome Bisulfite Sequencing Data. Methods in molecular biology. 2842. 391–403. 2 indexed citations
5.
Hao, Yuhan, Tim Stuart, Madeline H. Kowalski, et al.. (2023). Dictionary learning for integrative, multimodal and scalable single-cell analysis. Nature Biotechnology. 42(2). 293–304. 1325 indexed citations breakdown →
6.
Stuart, Tim, Stephanie Hao, Bingjie Zhang, et al.. (2022). Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution. Nature Biotechnology. 41(6). 806–812. 47 indexed citations
7.
Zhang, Bingjie, Avi Srivastava, Eleni P. Mimitou, et al.. (2022). Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro. Nature Biotechnology. 40(8). 1220–1230. 66 indexed citations
8.
Stuart, Tim, et al.. (2021). Single-cell chromatin state analysis with Signac. Nature Methods. 18(11). 1333–1341. 673 indexed citations breakdown →
9.
Missarova, Alsu, Jaison Jain, Andrew Butler, et al.. (2021). geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq. Genome biology. 22(1). 333–333. 19 indexed citations
10.
Rood, Jennifer, Tim Stuart, Shila Ghazanfar, et al.. (2019). Toward a Common Coordinate Framework for the Human Body. Cell. 179(7). 1455–1467. 62 indexed citations
11.
Stuart, Tim, Andrew Butler, Paul Hoffman, et al.. (2019). Comprehensive Integration of Single-Cell Data. Cell. 177(7). 1888–1902.e21. 7937 indexed citations breakdown →
12.
Wang, Wei, Xiang Niu, Tim Stuart, et al.. (2019). A single-cell transcriptional roadmap for cardiopharyngeal fate diversification. Nature Cell Biology. 21(6). 674–686. 56 indexed citations
13.
Stuart, Tim & Rahul Satija. (2019). Integrative single-cell analysis. Nature Reviews Genetics. 20(5). 257–272. 872 indexed citations breakdown →
14.
Cheng, Riyan, Peter J. Gollan, Tim Stuart, et al.. (2019). A Genome‐Wide Association Study of Non‐Photochemical Quenching in response to local seasonal climates in Arabidopsis thaliana. Plant Direct. 3(5). e00138–e00138. 27 indexed citations
15.
Stuart, Tim, Sam Buckberry, & Ryan Lister. (2018). Approaches for the Analysis and Interpretation of Whole Genome Bisulfite Sequencing Data. Methods in molecular biology. 1767. 299–310. 6 indexed citations
16.
Stuart, Tim, Steven R. Eichten, Jonathan Cahn, et al.. (2016). Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation. eLife. 5. 150 indexed citations
17.
Eichten, Steven R., Tim Stuart, Akanksha Srivastava, Ryan Lister, & Justin Borevitz. (2016). DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity. Genome Research. 26(11). 1520–1531. 28 indexed citations
18.
Kawakatsu, Taiji, Tim Stuart, Natalie W. Breakfield, et al.. (2016). Unique cell-type-specific patterns of DNA methylation in the root meristem. Nature Plants. 2(5). 16058–16058. 141 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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