Ryo Nakaki

2.1k total citations · 1 hit paper
18 papers, 1.2k citations indexed

About

Ryo Nakaki is a scholar working on Molecular Biology, Cancer Research and Oncology. According to data from OpenAlex, Ryo Nakaki has authored 18 papers receiving a total of 1.2k indexed citations (citations by other indexed papers that have themselves been cited), including 14 papers in Molecular Biology, 3 papers in Cancer Research and 2 papers in Oncology. Recurrent topics in Ryo Nakaki's work include Epigenetics and DNA Methylation (7 papers), RNA modifications and cancer (3 papers) and Cancer-related gene regulation (3 papers). Ryo Nakaki is often cited by papers focused on Epigenetics and DNA Methylation (7 papers), RNA modifications and cancer (3 papers) and Cancer-related gene regulation (3 papers). Ryo Nakaki collaborates with scholars based in Japan, United States and Denmark. Ryo Nakaki's co-authors include Hiroyuki Aburatani, Yoshihiro Okuda, Hideki Hatanaka, Hideya Kawaji, Chikara Meno, Jun Sese, Shinya Oki, Go Shioi, Tazro Ohta and Osamu Ogasawara and has published in prestigious journals such as Nucleic Acids Research, Journal of Biological Chemistry and Nature Communications.

In The Last Decade

Ryo Nakaki

18 papers receiving 1.2k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Ch IP ‐Atlas: a data‐mining suite powered by full integration of public Ch IP ‐seq data

2018 472 citations Shinya Oki, Tazro Ohta et al. EMBO Reports profile →

Peers

Countries citing papers authored by Ryo Nakaki

Since Specialization

Citations

This map shows the geographic impact of Ryo Nakaki's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ryo Nakaki with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ryo Nakaki more than expected).

Fields of papers citing papers by Ryo Nakaki

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ryo Nakaki. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ryo Nakaki. The network helps show where Ryo Nakaki may publish in the future.

Co-authorship network of co-authors of Ryo Nakaki

This figure shows the co-authorship network connecting the top 25 collaborators of Ryo Nakaki. A scholar is included among the top collaborators of Ryo Nakaki based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Ryo Nakaki. Ryo Nakaki is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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18 of 18 papers shown

#	Work	Indexed citations
1	Transfer Elastic Net for Developing Epigenetic Clocks for the Japanese Population 2024 ·Mathematics ·(unknown), Ryo Nakaki	2
2	Unraveling the DNA methylation landscape in dog blood across breeds 2024 ·BMC Genomics ·Miyuki Nakamura, Yuki Matsumoto, (unknown), (unknown), Ryo Nakaki, Masahiro Okumura, Jumpei Yamazaki	2
3	Bivalent-histone-marked immediate-early gene regulation is vital for VEGF-responsive angiogenesis 2022 ·Cell Reports ·Yasuharu Kanki, Masashi Muramatsu, (unknown), Kenta Kikuchi, Yoshiki Higashijima, Ryo Nakaki, Jun‐ichi Suehiro, Yuji C. Sasaki, Yoshiaki Kubota, Haruhiko Koseki, Hiroshi Morioka, Tatsuhiko Kodama, Mitsuyoshi Nakao, Daisuke Kurotaki, Hiroyuki Aburatani, Takashi Minami	14
4	TET1 upregulation drives cancer cell growth through aberrant enhancer hydroxymethylation of HMGA2 in hepatocellular carcinoma 2021 ·Cancer Science ·(unknown), Genta Nagae, M. Seki, Yotaro Kudo, Asuka Kamio, Akimasa Hayashi, Atsushi Okabe, Satoshi Ota, Shuichi Tsutsumi, Takanori Fujita, Shogo Yamamoto, Ryo Nakaki, Yasuharu Kanki, Tsuyoshi Osawa, Yutaka Midorikawa, Keisuke Tateishi, Masao Ichinose, Hiroyuki Aburatani	20
5	Histone demethylase JMJD1A coordinates acute and chronic adaptation to cold stress via thermogenic phospho-switch 2018 ·Nature Communications ·Yohei Abe, (unknown), Hiroki Takahashi, Yoshihiro Matsumura, (unknown), Shuying Jiang, Ryo Nakaki, Aoi Uchida, (unknown), Makoto Naito, Shingo Kajimura, Hiroshi Kimurâ, Timothy F. Osborne, Hiroyuki Aburatani, Tatsuhiko Kodama, Takeshi Inagaki, Juro Sakai	62
6	ChIP-Atlas 公開チップ-seqデータの完全統合により駆動されたデータマイニング・スイート【JST・京大機械翻訳】 2018 ·EMBO Reports ·Shinya Oki, (unknown), Go Shioi, (unknown), Osamu Ogasawara, Yoshihiro Okuda, (unknown), Ryo Nakaki, Jun Sese, (unknown)	1
7	Genome-wide analysis revealed that DZNep reduces tubulointerstitial fibrosis via down-regulation of pro-fibrotic genes 2018 ·Scientific Reports ·Imari Mimura, Yosuke Hirakawa, Yasuharu Kanki, Ryo Nakaki, Yutaka Suzuki, Tetsuhiro Tanaka, Hiroyuki Aburatani, Masaomi Nangaku	18
8	Ch IP ‐Atlas: a data‐mining suite powered by full integration of public Ch IP ‐seq data breakdown → 2018 ·EMBO Reports ·Shinya Oki, Tazro Ohta, Go Shioi, Hideki Hatanaka, Osamu Ogasawara, Yoshihiro Okuda, Hideya Kawaji, Ryo Nakaki, Jun Sese, Chikara Meno	472
9	Diminished nuclear RNA decay upon Salmonella infection upregulates antibacterial noncoding RNA s 2018 ·The EMBO Journal ·Katsutoshi Imamura, Akiko Takaya, Yoichi Ishida, (unknown), Toshiki Taya, Ryo Nakaki, (unknown), Naoto Imamachi, (unknown), Toshimichi Yamada, (unknown), (unknown), (unknown), Kazuyuki Tao, (unknown), Yutaka Suzuki, Masami Nagahama, Tomoko Yamamoto, Torben Heick Jensen, Nobuyoshi Akimitsu	54
10	Downregulation of ERG and FLI1 expression in endothelial cells triggers endothelial-to-mesenchymal transition 2018 ·PLoS Genetics ·Nao Nagai, Hiroto Ohguchi, Ryo Nakaki, Yoshihiro Matsumura, Yasuharu Kanki, Juro Sakai, Hiroyuki Aburatani, Takashi Minami	51
11	Dynamically and epigenetically coordinated GATA/ETS/SOX transcription factor expression is indispensable for endothelial cell differentiation 2017 ·Nucleic Acids Research ·Yasuharu Kanki, Ryo Nakaki, Teppei Shimamura, (unknown), Kohei Yamamizu, Shiori Katayama, Jun‐ichi Suehiro, Tsuyoshi Osawa, Hiroyuki Aburatani, Tatsuhiko Kodama, Youichiro Wada, Jun K. Yamashita, Takashi Minami	42
12	Dynamics of chromatin accessibility during TGF-β-induced EMT of Ras-transformed mammary gland epithelial cells 2017 ·Scientific Reports ·(unknown), Yusuke Tamura, Natsumi Kawasaki, Kazunobu Isogaya, Ryo Nakaki, Anna Mizutani, Shuichi Tsutsumi, Hiroyuki Aburatani, Kohei Miyazono, Daizo Koinuma	23
13	Extracellular Acidic pH Activates the Sterol Regulatory Element-Binding Protein 2 to Promote Tumor Progression 2017 ·Cell Reports ·Ayano Kondo, Shogo Yamamoto, Ryo Nakaki, Teppei Shimamura, Takao Hamakubo, Juro Sakai, Tatsuhiko Kodama, Tetsuo Yoshida, Hiroyuki Aburatani, Tsuyoshi Osawa	147
14	Novel lnc RNA regulated by HIF-1 inhibits apoptotic cell death in the renal tubular epithelial cells under hypoxia 2017 ·Physiological Reports ·Imari Mimura, Yosuke Hirakawa, Yasuharu Kanki, (unknown), Ryo Nakaki, Yutaka Suzuki, Tetsuhiro Tanaka, Hiroyuki Aburatani, Masaomi Nangaku	35
15	H3K4/H3K9me3 Bivalent Chromatin Domains Targeted by Lineage-Specific DNA Methylation Pauses Adipocyte Differentiation 2015 ·Molecular Cell ·Yoshihiro Matsumura, Ryo Nakaki, Takeshi Inagaki, (unknown), (unknown), Hiroshi Kimurâ, Toshiya Tanaka, Shuichi Tsutsumi, Mitsuyoshi Nakao, Takefumi Doi, Kiyoko Fukami, Timothy F. Osborne, Tatsuhiko Kodama, Hiroyuki Aburatani, Juro Sakai	162
16	JMJD1A is a signal-sensing scaffold that regulates acute chromatin dynamics via SWI/SNF association for thermogenesis 2015 ·Nature Communications ·Yohei Abe, (unknown), Yoshihiro Matsumura, Takeshi Kawamura, Ryo Nakaki, Yuya Tsurutani, (unknown), Akira Shiono, Kenta Magoori, (unknown), (unknown), Shingo Kajimura, Hiroshi Kimurâ, Toshiya Tanaka, Kiyoko Fukami, Timothy F. Osborne, Tatsuhiko Kodama, Hiroyuki Aburatani, Takeshi Inagaki, Juro Sakai	88
17	The FBXL10/KDM2B Scaffolding Protein Associates with Novel Polycomb Repressive Complex-1 to Regulate Adipogenesis 2014 ·Journal of Biological Chemistry ·Takeshi Inagaki, Satoshi Iwasaki, Yoshihiro Matsumura, Takeshi Kawamura, Toshiya Tanaka, Yohei Abe, (unknown), Yuya Tsurutani, (unknown), (unknown), (unknown), Kenta Magoori, Ryo Nakaki, Timothy F. Osborne, Kiyoko Fukami, Hiroyuki Aburatani, Tatsuhiko Kodama, Juro Sakai	28
18	A novel ab initio identification system of transcriptional regulation motifs in genome DNA sequences based on direct comparison scheme of signal/noise distributions 2012 ·Nucleic Acids Research ·Ryo Nakaki, Jiyoung Kang, Masaru Tateno	4

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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