Shinya Oki

3.5k total citations · 2 hit papers
59 papers, 1.9k citations indexed

About

Shinya Oki is a scholar working on Molecular Biology, Genetics and Cancer Research. According to data from OpenAlex, Shinya Oki has authored 59 papers receiving a total of 1.9k indexed citations (citations by other indexed papers that have themselves been cited), including 48 papers in Molecular Biology, 9 papers in Genetics and 7 papers in Cancer Research. Recurrent topics in Shinya Oki's work include Epigenetics and DNA Methylation (12 papers), Genomics and Chromatin Dynamics (9 papers) and Developmental Biology and Gene Regulation (8 papers). Shinya Oki is often cited by papers focused on Epigenetics and DNA Methylation (12 papers), Genomics and Chromatin Dynamics (9 papers) and Developmental Biology and Gene Regulation (8 papers). Shinya Oki collaborates with scholars based in Japan, United States and Germany. Shinya Oki's co-authors include Tazro Ohta, Chikara Meno, Zhaonan Zou, Hideya Kawaji, Hiroshi Hamada, Hideki Hatanaka, Jun Sese, Yoshihiro Okuda, Go Shioi and Fumihito Miura and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

In The Last Decade

Shinya Oki

55 papers receiving 1.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Ch IP ‐Atlas: a data‐mining suite powered by full integration of public Ch IP ‐seq data

2018 472 citations Shinya Oki, Tazro Ohta et al. EMBO Reports profile →
ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data

2022 188 citations Zhaonan Zou, Tazro Ohta et al. Nucleic Acids Research profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Shinya Oki Japan	22	1.5k	272	245	147	140	59	1.9k
Anna Křepelová Czechia	18	1.6k 1.1×	292 1.1×	235 1.0×	128 0.9×	139 1.0×	54	2.0k
Dan Liang United States	14	1.8k 1.2×	287 1.1×	215 0.9×	154 1.0×	255 1.8×	25	2.3k
Mirang Kim South Korea	24	1.2k 0.8×	161 0.6×	439 1.8×	146 1.0×	200 1.4×	58	1.7k
Bernard Jost France	27	1.6k 1.0×	434 1.6×	297 1.2×	235 1.6×	226 1.6×	48	2.3k
Kyoichi Isono Japan	29	2.2k 1.4×	357 1.3×	170 0.7×	192 1.3×	202 1.4×	58	2.6k
Robin Andersson Denmark	30	2.4k 1.5×	470 1.7×	473 1.9×	130 0.9×	116 0.8×	59	2.9k
Ying Cao China	22	1.2k 0.8×	254 0.9×	207 0.8×	88 0.6×	142 1.0×	64	1.6k
Pierre‐Olivier Angrand France	23	1.7k 1.1×	420 1.5×	256 1.0×	89 0.6×	122 0.9×	44	2.0k
Hong Qu China	21	1000 0.6×	203 0.7×	189 0.8×	87 0.6×	194 1.4×	90	1.6k

Countries citing papers authored by Shinya Oki

Since Specialization

Citations

This map shows the geographic impact of Shinya Oki's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Shinya Oki with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Shinya Oki more than expected).

Fields of papers citing papers by Shinya Oki

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Shinya Oki. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Shinya Oki. The network helps show where Shinya Oki may publish in the future.

Co-authorship network of co-authors of Shinya Oki

This figure shows the co-authorship network connecting the top 25 collaborators of Shinya Oki. A scholar is included among the top collaborators of Shinya Oki based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Shinya Oki. Shinya Oki is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Zou, Zhaonan, Hidemasa Bono, Yuki Moriya, et al.. (2025). Extraction of biological terms using large language models enhances the usability of metadata in the BioSample database. GigaScience. 14.

Hayashi, Akimasa, Yu-Jui Ho, Alvin P. Makohon-Moore, et al.. (2025). The Noncoding Mutational Landscape of Pancreatic Cancer Reveals Recurrent Somatic Mutations in Enhancer Regions. Cancer Research Communications. 5(10). 1839–1851. 1 indexed citations

Kuboyama, Kazuya, et al.. (2025). High spatial resolution gene expression profiling and characterization of neuroblasts migrating in the peri-injured cortex using photo-isolation chemistry. Frontiers in Neuroscience. 18. 1504047–1504047. 3 indexed citations

Katoh, Hiroshi, Ryuichi Kimura, Tsuyoshi Sekizuka, et al.. (2024). Structural and molecular properties of mumps virus inclusion bodies. Science Advances. 10(49). eadr0359–eadr0359. 1 indexed citations

Zou, Zhaonan, et al.. (2023). Elucidating disease-associated mechanisms triggered by pollutants via the epigenetic landscape using large-scale ChIP-Seq data. Epigenetics & Chromatin. 16(1). 34–34. 4 indexed citations

Zou, Zhaonan, Tazro Ohta, Fumihito Miura, & Shinya Oki. (2022). ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data. Nucleic Acids Research. 50(W1). W175–W182. 188 indexed citations breakdown →

Hirata, Hirohito, Kenichi Nishioka, Hiroaki Honda, et al.. (2022). A novel role of helix‐loop‐helix transcriptional factor Bhlhe40 in osteoclast activation. Journal of Cellular Physiology. 237(10). 3912–3926. 7 indexed citations

Zou, Zhaonan, M Iwata, Yoshihiro Yamanishi, & Shinya Oki. (2022). Epigenetic landscape of drug responses revealed through large-scale ChIP-seq data analyses. BMC Bioinformatics. 23(1). 51–51. 8 indexed citations

Yoshizaki, Kaichi, Ryuichi Kimura, Hisato Kobayashi, et al.. (2021). Paternal age affects offspring via an epigenetic mechanism involving REST/NRSF. EMBO Reports. 22(2). e51524–e51524. 49 indexed citations

10.

Oki, Shinya, Go Shioi, Osamu Ogasawara, et al.. (2018). ChIP-Atlas 公開チップ-seqデータの完全統合により駆動されたデータマイニング・スイート【JST・京大機械翻訳】. EMBO Reports. 19(12). 46255. 1 indexed citations

11.

Mochizuki, Kentaro, et al.. (2018). Blimp1によるHDAC3の選択的補充による体細胞遺伝子の抑制はマウス始原生殖細胞運命決定に必須である【JST・京大機械翻訳】. Cell Reports. 24(10). 2682–2693. 4 indexed citations

12.

Semba, Yuichiro, Akihito Harada, Kazumitsu Maehara, et al.. (2017). Chd2 regulates chromatin for proper gene expression toward differentiation in mouse embryonic stem cells. Nucleic Acids Research. 45(15). 8758–8772. 28 indexed citations

13.

Oki, Shinya, Kazumitsu Maehara, Yasuyuki Ohkawa, & Chikara Meno. (2014). SraTailor: Graphical user interface software for processing and visualizing Ch IP ‐seq data. Genes to Cells. 19(12). 919–926. 14 indexed citations

14.

Shiratori, Hidetaka, Kenta Yashiro, Naomi Iwai, et al.. (2014). Self-regulated left-right asymmetric expression of Pitx2c in the developing mouse limb. Developmental Biology. 395(2). 331–341. 7 indexed citations

15.

Miki, Rika, Tetsu Yoshida, Kazuya Murata, et al.. (2011). Fate maps of ventral and dorsal pancreatic progenitor cells in early somite stage mouse embryos. Mechanisms of Development. 128(11-12). 597–609. 19 indexed citations

16.

Saijoh, Yukio, Shinya Oki, Tetsuya Nakamura, et al.. (2005). Two nodal‐responsive enhancers control left–right asymmetric expression of Nodal. Developmental Dynamics. 232(4). 1031–1036. 26 indexed citations

17.

Saijoh, Yukio, Shinya Oki, Sachiko Oh‐ishi, & Hiroshi Hamada. (2003). Left–right patterning of the mouse lateral plate requires nodal produced in the node. Developmental Biology. 256(1). 161–173. 115 indexed citations

18.

Oki, Shinya, et al.. (2002). An observation of the initial stage towards a symbiotic relationship. Biosystems. 65(2-3). 105–112. 9 indexed citations

19.

Oki, Shinya, et al.. (2002). Unique Colony Housing the Coexisting Escherichia coli and Dictyostelium discoideum. Journal of Biological Physics. 28(4). 793–797. 1 indexed citations

20.

Desaki, Junzo, Shinya Oki, & Yoshio Matsuda. (1996). Morphological Changes of Capillaries Associated with Muscle-Fiber Atrophy in the Extensor Digitorum Longus Muscle of Aged Rats. Journal of Electron Microscopy. 45(5). 364–371. 5 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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