Ryan L. Hayes

1.4k total citations
29 papers, 912 citations indexed

About

Ryan L. Hayes is a scholar working on Molecular Biology, Atomic and Molecular Physics, and Optics and Computational Theory and Mathematics. According to data from OpenAlex, Ryan L. Hayes has authored 29 papers receiving a total of 912 indexed citations (citations by other indexed papers that have themselves been cited), including 27 papers in Molecular Biology, 5 papers in Atomic and Molecular Physics, and Optics and 5 papers in Computational Theory and Mathematics. Recurrent topics in Ryan L. Hayes's work include Protein Structure and Dynamics (19 papers), RNA and protein synthesis mechanisms (15 papers) and DNA and Nucleic Acid Chemistry (6 papers). Ryan L. Hayes is often cited by papers focused on Protein Structure and Dynamics (19 papers), RNA and protein synthesis mechanisms (15 papers) and DNA and Nucleic Acid Chemistry (6 papers). Ryan L. Hayes collaborates with scholars based in United States, Australia and Sweden. Ryan L. Hayes's co-authors include Charles L. Brooks, José N. Onuchic, Jonah Z. Vilseck, Paul C. Whitford, Jeffrey K. Noel, Heiko Lammert, Mariana Levi, Karissa Y. Sanbonmatsu, Mohit Raghunathan and Udayan Mohanty and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Journal of the American Chemical Society and Physical Review Letters.

In The Last Decade

Ryan L. Hayes

27 papers receiving 900 citations

Peers

Countries citing papers authored by Ryan L. Hayes

Since Specialization

Citations

This map shows the geographic impact of Ryan L. Hayes's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ryan L. Hayes with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ryan L. Hayes more than expected).

Fields of papers citing papers by Ryan L. Hayes

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ryan L. Hayes. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ryan L. Hayes. The network helps show where Ryan L. Hayes may publish in the future.

Co-authorship network of co-authors of Ryan L. Hayes

This figure shows the co-authorship network connecting the top 25 collaborators of Ryan L. Hayes. A scholar is included among the top collaborators of Ryan L. Hayes based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Ryan L. Hayes. Ryan L. Hayes is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	Multiple Molecule λ-Dynamics: Probing Drug Resistance with Concurrent Protein and Ligand Perturbations 2025 ·The Journal of Physical Chemistry Letters ·(unknown), Ryan L. Hayes, Charles L. Brooks, Jonah Z. Vilseck	0
2	Multisite λ-Dynamics for Protein–DNA Binding Affinity Prediction 2025 ·Journal of Chemical Theory and Computation ·(unknown), Jonah Z. Vilseck, Jin Yu, Ryan L. Hayes	1
3	Predicting Thermodynamic Stability at Protein G Sites with Deleterious Mutations Using λ-Dynamics with Competitive Screening 2025 ·The Journal of Physical Chemistry Letters ·Christopher Yeh, Ryan L. Hayes	0
4	Selection pressures on evolution of ribonuclease H explored with rigorous free–energy–based design 2024 ·Proceedings of the National Academy of Sciences ·Ryan L. Hayes, (unknown), Susan Marqusee, Charles L. Brooks	5
5	How to Sample Dozens of Substitutions per Site with λ Dynamics 2024 ·Journal of Chemical Theory and Computation ·Ryan L. Hayes, (unknown), (unknown), Amirmasoud Samadi, Jonah Z. Vilseck, Charles L. Brooks	8
6	Fast free energy estimates from λ-dynamics with bias-updated Gibbs sampling 2023 ·Nature Communications ·(unknown), Ryan L. Hayes, Xinqiang Ding, (unknown), Jonah Z. Vilseck	12
7	Addressing Intersite Coupling Unlocks Large Combinatorial Chemical Spaces for Alchemical Free Energy Methods 2022 ·Journal of Chemical Theory and Computation ·Ryan L. Hayes, Jonah Z. Vilseck, Charles L. Brooks	10
8	Automated, Accurate, and Scalable Relative Protein–Ligand Binding Free-Energy Calculations Using Lambda Dynamics 2020 ·Journal of Chemical Theory and Computation ·E. Prabhu Raman, Thomas J. Paul, Ryan L. Hayes, Charles L. Brooks	57
9	Structure-Based Model of RNA Pseudoknot Captures Magnesium-Dependent Folding Thermodynamics 2019 ·The Journal of Physical Chemistry B ·(unknown), Ryan L. Hayes, Heiko Lammert, Ryan R. Cheng, José N. Onuchic	5
10	Overcoming Challenging Substituent Perturbations with Multisite λ-Dynamics: A Case Study Targeting β-Secretase 1 2019 ·The Journal of Physical Chemistry Letters ·Jonah Z. Vilseck, Noor Sohail, Ryan L. Hayes, Charles L. Brooks	21
11	Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing 2018 ·Molecular Cell ·Julia R. Widom, Yuri A. Nedialkov, Victoria Rai, Ryan L. Hayes, Charles L. Brooks, Irina Artsimovitch, Nils G. Walter	60
12	CDOCKER and $$\lambda$$-dynamics for prospective prediction in D3R Grand Challenge 2 2017 ·Journal of Computer-Aided Molecular Design ·Xinqiang Ding, Ryan L. Hayes, Jonah Z. Vilseck, (unknown), Charles L. Brooks	14
13	A magnesium-induced triplex pre-organizes the SAM-II riboswitch 2017 ·PLoS Computational Biology ·Susmita Roy, Heiko Lammert, Ryan L. Hayes, Bin Chen, Regan M. LeBlanc, T. Kwaku Dayie, José N. Onuchic, Karissa Y. Sanbonmatsu	29
14	Gibbs Sampler-Based λ-Dynamics and Rao–Blackwell Estimator for Alchemical Free Energy Calculation 2017 ·Journal of Chemical Theory and Computation ·Xinqiang Ding, Jonah Z. Vilseck, Ryan L. Hayes, Charles L. Brooks	33
15	SMOG 2: A Versatile Software Package for Generating Structure-Based Models 2016 ·PLoS Computational Biology ·Jeffrey K. Noel, Mariana Levi, Mohit Raghunathan, Heiko Lammert, Ryan L. Hayes, José N. Onuchic, Paul C. Whitford	211
16	Connecting the Sequence-Space of Bacterial Signaling Proteins to Phenotypes Using Coevolutionary Landscapes 2016 ·Molecular Biology and Evolution ·Ryan R. Cheng, (unknown), Ryan L. Hayes, Herbert Levine, Samuel Coulbourn Flores, José N. Onuchic, Faruck Morcos	47
17	Magnesium Dependence of the RNA Free Energy Landscape 2015 ·Biophysical Journal ·Ryan L. Hayes, Jeffrey K. Noel, (unknown), Paul C. Whitford, Karissa Y. Sanbonmatsu, Udayan Mohanty, José N. Onuchic	1
18	Generalized Manning Condensation Model Captures the RNA Ion Atmosphere 2015 ·Physical Review Letters ·Ryan L. Hayes, Jeffrey K. Noel, (unknown), Paul C. Whitford, Karissa Y. Sanbonmatsu, Udayan Mohanty, José N. Onuchic	60
19	Reduced Model Captures Mg2+-RNA Interaction Free Energy of Riboswitches 2014 ·Biophysical Journal ·Ryan L. Hayes, Jeffrey K. Noel, Paul C. Whitford, Udayan Mohanty, Karissa Y. Sanbonmatsu, José N. Onuchic	38
20	Intercellular Stress Reconstitution from Traction Force Data 2014 ·Biophysical Journal ·Juliane Zimmermann, Ryan L. Hayes, Markus Basan, José N. Onuchic, Wouter‐Jan Rappel, Herbert Levine	23

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact