Jonah Z. Vilseck

1.8k total citations · 1 hit paper
37 papers, 1.3k citations indexed

About

Jonah Z. Vilseck is a scholar working on Molecular Biology, Atomic and Molecular Physics, and Optics and Spectroscopy. According to data from OpenAlex, Jonah Z. Vilseck has authored 37 papers receiving a total of 1.3k indexed citations (citations by other indexed papers that have themselves been cited), including 29 papers in Molecular Biology, 12 papers in Atomic and Molecular Physics, and Optics and 8 papers in Spectroscopy. Recurrent topics in Jonah Z. Vilseck's work include Protein Structure and Dynamics (21 papers), Spectroscopy and Quantum Chemical Studies (12 papers) and Computational Drug Discovery Methods (7 papers). Jonah Z. Vilseck is often cited by papers focused on Protein Structure and Dynamics (21 papers), Spectroscopy and Quantum Chemical Studies (12 papers) and Computational Drug Discovery Methods (7 papers). Jonah Z. Vilseck collaborates with scholars based in United States, India and France. Jonah Z. Vilseck's co-authors include William L. Jorgensen, Julian Tirado‐Rives, Leela S. Dodda, Charles L. Brooks, Ryan L. Hayes, Xinqiang Ding, Daniel J. Cole, M. C. Payne, Kira A. Armacost and Kara J. Cutrona and has published in prestigious journals such as Journal of Biological Chemistry, Angewandte Chemie International Edition and Nature Communications.

In The Last Decade

Jonah Z. Vilseck

34 papers receiving 1.3k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

1.14*CM1A-LBCC: Localized Bond-Charge Corrected CM1A Charges for Condensed-Phase Simulations

2017 589 citations Leela S. Dodda, Jonah Z. Vilseck et al. The Journal of Physical Chemistry B profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Jonah Z. Vilseck United States	16	543	311	273	192	188	37	1.3k
Israel Cabeza de Vaca United States	12	502 0.9×	334 1.1×	179 0.7×	255 1.3×	226 1.2×	18	1.6k
L. Zuo Hong Kong	6	648 1.2×	459 1.5×	217 0.8×	326 1.7×	179 1.0×	9	1.7k
Leela S. Dodda United States	6	393 0.7×	477 1.5×	281 1.0×	310 1.6×	369 2.0×	6	2.0k
André Silva Pimentel Brazil	20	301 0.6×	284 0.9×	199 0.7×	249 1.3×	100 0.5×	73	1.4k
Marie L. Laury United States	14	355 0.7×	360 1.2×	504 1.8×	249 1.3×	106 0.6×	17	1.3k
Lin Frank Song United States	14	769 1.4×	345 1.1×	236 0.9×	108 0.6×	104 0.6×	33	1.5k
Jakob Seibert Germany	12	269 0.5×	519 1.7×	369 1.4×	406 2.1×	114 0.6×	19	1.5k
Zhenyu Lu China	20	599 1.1×	221 0.7×	490 1.8×	194 1.0×	86 0.5×	55	1.4k
Haochuan Chen China	19	510 0.9×	256 0.8×	129 0.5×	119 0.6×	130 0.7×	48	1.0k
Sven Jakobtorweihen Germany	25	350 0.6×	410 1.3×	238 0.9×	319 1.7×	336 1.8×	49	1.4k

Countries citing papers authored by Jonah Z. Vilseck

Since Specialization

Citations

This map shows the geographic impact of Jonah Z. Vilseck's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jonah Z. Vilseck with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jonah Z. Vilseck more than expected).

Fields of papers citing papers by Jonah Z. Vilseck

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jonah Z. Vilseck. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jonah Z. Vilseck. The network helps show where Jonah Z. Vilseck may publish in the future.

Co-authorship network of co-authors of Jonah Z. Vilseck

This figure shows the co-authorship network connecting the top 25 collaborators of Jonah Z. Vilseck. A scholar is included among the top collaborators of Jonah Z. Vilseck based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jonah Z. Vilseck. Jonah Z. Vilseck is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Hayes, Ryan L., et al.. (2025). Multiple Molecule λ-Dynamics: Probing Drug Resistance with Concurrent Protein and Ligand Perturbations. The Journal of Physical Chemistry Letters. 16(25). 6273–6278.

Vilseck, Jonah Z., et al.. (2025). Multisite λ-Dynamics for Protein–DNA Binding Affinity Prediction. Journal of Chemical Theory and Computation. 21(7). 3536–3544. 1 indexed citations

Sishtla, Kamakshi, Ratan Kumar, Cátia Gomes, et al.. (2025). Ref-1 is overexpressed in neovascular eye disease and targetable with a novel inhibitor. Angiogenesis. 28(1). 11–11. 3 indexed citations

Kumar, Ratan, Jingwei Meng, Steven M. Johnson, et al.. (2025). Chemically induced partial unfolding of the multifunctional apurinic/apyrimidinic endonuclease 1. Protein Science. 34(6). e70148–e70148. 1 indexed citations

Hayes, Ryan L., et al.. (2024). How to Sample Dozens of Substitutions per Site with λ Dynamics. Journal of Chemical Theory and Computation. 20(14). 6098–6110. 8 indexed citations

Vilseck, Jonah Z., et al.. (2024). Superimposing Ligands with a Ligand Overlay as an Alternate Topology Model for λ-Dynamics-Based Calculations. The Journal of Physical Chemistry B. 128(46). 11359–11368. 3 indexed citations

Vilseck, Jonah Z., et al.. (2024). A λ-Dynamics Investigation of Insulin Wakayama and Other A3 Variant Binding Affinities to the Insulin Receptor. Journal of Chemical Information and Modeling. 64(14). 5657–5670. 1 indexed citations

Hudmon, Andy, et al.. (2023). Identification of nonhistone substrates of the lysine methyltransferase PRDM9. Journal of Biological Chemistry. 299(5). 104651–104651. 7 indexed citations

Hayes, Ryan L., et al.. (2023). Fast free energy estimates from λ-dynamics with bias-updated Gibbs sampling. Nature Communications. 14(1). 8515–8515. 12 indexed citations

10.

Vilseck, Jonah Z., et al.. (2022). Optimizing Multisite λ-Dynamics Throughput with Charge Renormalization. Journal of Chemical Information and Modeling. 62(6). 1479–1488. 10 indexed citations

11.

Vilseck, Jonah Z., et al.. (2021). Gas-phase ion/ion chemistry for structurally sensitive probes of gaseous protein ion structure: Electrostatic and electrostatic to covalent cross-linking. International Journal of Mass Spectrometry. 463. 116549–116549. 15 indexed citations

12.

Wijeratne, H. R. Sagara, et al.. (2020). Mutant thermal proteome profiling for characterization of missense protein variants and their associated phenotypes within the proteome. Journal of Biological Chemistry. 295(48). 16219–16238. 20 indexed citations

13.

Qian, Yue, Israel Cabeza de Vaca, Jonah Z. Vilseck, et al.. (2019). Absolute Free Energy of Binding Calculations for Macrophage Migration Inhibitory Factor in Complex with a Druglike Inhibitor. The Journal of Physical Chemistry B. 123(41). 8675–8685. 19 indexed citations

14.

Vilseck, Jonah Z., Noor Sohail, Ryan L. Hayes, & Charles L. Brooks. (2019). Overcoming Challenging Substituent Perturbations with Multisite λ-Dynamics: A Case Study Targeting β-Secretase 1. The Journal of Physical Chemistry Letters. 10(17). 4875–4880. 21 indexed citations

15.

Ding, Xinqiang, Jonah Z. Vilseck, & Charles L. Brooks. (2019). Fast Solver for Large Scale Multistate Bennett Acceptance Ratio Equations. Journal of Chemical Theory and Computation. 15(2). 799–802. 40 indexed citations

16.

Vaca, Israel Cabeza de, Yue Qian, Jonah Z. Vilseck, Julian Tirado‐Rives, & William L. Jorgensen. (2018). Enhanced Monte Carlo Methods for Modeling Proteins Including Computation of Absolute Free Energies of Binding. Journal of Chemical Theory and Computation. 14(6). 3279–3288. 33 indexed citations

17.

Dodda, Leela S., Jonah Z. Vilseck, Julian Tirado‐Rives, & William L. Jorgensen. (2017). 1.14*CM1A-LBCC: Localized Bond-Charge Corrected CM1A Charges for Condensed-Phase Simulations. The Journal of Physical Chemistry B. 121(15). 3864–3870. 589 indexed citations breakdown →

18.

Ding, Xinqiang, et al.. (2017). CDOCKER and $$\lambda$$-dynamics for prospective prediction in D3R Grand Challenge 2. Journal of Computer-Aided Molecular Design. 32(1). 89–102. 14 indexed citations

19.

Ding, Xinqiang, Jonah Z. Vilseck, Ryan L. Hayes, & Charles L. Brooks. (2017). Gibbs Sampler-Based λ-Dynamics and Rao–Blackwell Estimator for Alchemical Free Energy Calculation. Journal of Chemical Theory and Computation. 13(6). 2501–2510. 33 indexed citations

20.

Vilseck, Jonah Z., Somisetti V. Sambasivarao, & Orlando Acevedo. (2011). Optimal scaling factors for CM1 and CM3 atomic charges in RM1‐based aqueous simulations. Journal of Computational Chemistry. 32(13). 2836–2842. 15 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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