Pavlos Pavlidis

7.3k total citations · 2 hit papers
58 papers, 4.8k citations indexed

About

Pavlos Pavlidis is a scholar working on Molecular Biology, Genetics and Plant Science. According to data from OpenAlex, Pavlos Pavlidis has authored 58 papers receiving a total of 4.8k indexed citations (citations by other indexed papers that have themselves been cited), including 32 papers in Molecular Biology, 30 papers in Genetics and 9 papers in Plant Science. Recurrent topics in Pavlos Pavlidis's work include Genomics and Phylogenetic Studies (21 papers), Genetic diversity and population structure (13 papers) and Genetic Mapping and Diversity in Plants and Animals (10 papers). Pavlos Pavlidis is often cited by papers focused on Genomics and Phylogenetic Studies (21 papers), Genetic diversity and population structure (13 papers) and Genetic Mapping and Diversity in Plants and Animals (10 papers). Pavlos Pavlidis collaborates with scholars based in Greece, Germany and United States. Pavlos Pavlidis's co-authors include Alexandros Stamatakis, Paschalia Kapli, Jiajie Zhang, Nikolaos Alachiotis, Wolfgang Stephan, Tomáš Flouri, Kassian Kobert, Sarah Lutteropp, Jian Zhang and Jeffrey D. Jensen and has published in prestigious journals such as Nature, Proceedings of the National Academy of Sciences and Nucleic Acids Research.

In The Last Decade

Pavlos Pavlidis

56 papers receiving 4.7k citations

Hit Papers

align trajectories sort by overperformance

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

A general species delimitation method with applications to phylogenetic placements

2013 2.2k citations Paschalia Kapli, Pavlos Pavlidis et al. Bioinformatics profile →
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo

2017 678 citations Paschalia Kapli, Sarah Lutteropp et al. Bioinformatics profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Pavlos Pavlidis Greece	23	2.0k	1.5k	1.3k	1.1k	697	58	4.8k
Guillaume Achaz France	25	1.7k 0.8×	1.8k 1.2×	1.7k 1.4×	1.2k 1.0×	565 0.8×	55	5.3k
April Wright United States	16	1.5k 0.7×	1.6k 1.1×	1.2k 0.9×	1.9k 1.7×	781 1.1×	33	5.0k
Paschalia Kapli United Kingdom	19	1.3k 0.7×	1.2k 0.8×	1.3k 1.1×	1.2k 1.0×	434 0.6×	32	4.0k
Joan Pons Spain	29	1.5k 0.7×	1.3k 0.9×	1.6k 1.3×	1.5k 1.3×	592 0.8×	93	4.4k
Paul B. Frandsen United States	20	1.9k 1.0×	1.9k 1.3×	1.5k 1.2×	2.2k 2.0×	1.0k 1.5×	77	5.7k
Laura Kvist Finland	23	1.9k 1.0×	1.4k 0.9×	1.7k 1.4×	1.6k 1.4×	658 0.9×	91	4.4k
Marina Panova Sweden	20	2.4k 1.2×	746 0.5×	1.3k 1.0×	792 0.7×	476 0.7×	47	3.8k
Guido Fritzsch Germany	17	1.4k 0.7×	2.7k 1.8×	1.4k 1.1×	1.0k 0.9×	525 0.8×	19	4.5k
Rowan D. H. Barrett Canada	29	3.0k 1.5×	1.2k 0.8×	1.6k 1.2×	1.4k 1.3×	543 0.8×	79	5.2k
Diep Thi Hoang Vietnam	6	1.4k 0.7×	2.4k 1.6×	1.6k 1.3×	1.7k 1.5×	1.4k 2.0×	11	6.4k

Countries citing papers authored by Pavlos Pavlidis

Since Specialization

Citations

This map shows the geographic impact of Pavlos Pavlidis's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Pavlos Pavlidis with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Pavlos Pavlidis more than expected).

Fields of papers citing papers by Pavlos Pavlidis

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Pavlos Pavlidis. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Pavlos Pavlidis. The network helps show where Pavlos Pavlidis may publish in the future.

Co-authorship network of co-authors of Pavlos Pavlidis

This figure shows the co-authorship network connecting the top 25 collaborators of Pavlos Pavlidis. A scholar is included among the top collaborators of Pavlos Pavlidis based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Pavlos Pavlidis. Pavlos Pavlidis is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Poulakakis, Nikos, et al.. (2025). Read Length Dominates Phylogenetic Placement Accuracy of Ancient DNA Reads. Molecular Biology and Evolution. 42(2). 1 indexed citations

Pavlidis, Pavlos, Gilles Gasparoni, Jörn Walter, et al.. (2024). Enhanced medullary and extramedullary granulopoiesis sustain the inflammatory response in lupus nephritis. Lupus Science & Medicine. 11(1). e001110–e001110. 10 indexed citations

Ioannidis, Panagiotis, Vít Dvořák, Konstantinos Mavridis, et al.. (2024). Comparative Genomics Uncovers the Evolutionary Dynamics of Detoxification and Insecticide Target Genes Across 11 Phlebotomine Sand Flies. Genome Biology and Evolution. 16(9). 1 indexed citations

Speidel, Leo, et al.. (2023). Balancing selection on genomic deletion polymorphisms in humans. eLife. 12. 13 indexed citations

Képeš, Erik, Jakub Vrábel, Panagiotis Siozos, et al.. (2023). Quantification of alloying elements in steel targets: The LIBS 2022 regression contest. Spectrochimica Acta Part B Atomic Spectroscopy. 206. 106710–106710. 11 indexed citations

Pavlidis, Pavlos, et al.. (2022). Cronos: A Machine Learning Pipeline for Description and Predictive Modeling of Microbial Communities Over Time. SHILAP Revista de lepidopterología. 2. 866902–866902. 2 indexed citations

Pavlidis, Pavlos, et al.. (2021). Structural classification of proteins based on the computationally efficient recurrence quantification analysis and horizontal visibility graphs. Bioinformatics. 37(13). 1796–1804. 6 indexed citations

Pfeifer, Bastian, Nikolaos Alachiotis, Pavlos Pavlidis, & Michael G. Schimek. (2020). Genome scans for selection and introgression based on k ‐nearest neighbour techniques. Molecular Ecology Resources. 20(6). 1597–1609. 12 indexed citations

Pavlidis, Pavlos, Lubov Neznanova, Rose‐Anne Romano, et al.. (2019). Independent amylase gene copy number bursts correlate with dietary preferences in mammals. eLife. 8. 67 indexed citations

10.

Banos, Aggelos, Anastasia Filia, Pavlos Pavlidis, et al.. (2019). Transcriptome reprogramming and myeloid skewing in haematopoietic stem and progenitor cells in systemic lupus erythematosus. Annals of the Rheumatic Diseases. 79(2). 242–253. 69 indexed citations

11.

Ndjiondjop, Marie-Noëlle, et al.. (2018). Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice. Theoretical and Applied Genetics. 132(4). 1145–1158. 15 indexed citations

12.

Kapli, Paschalia, Sarah Lutteropp, Jian Zhang, et al.. (2017). Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinformatics. 33(11). 1630–1638. 678 indexed citations breakdown →

13.

Xu, Duo, Pavlos Pavlidis, Sara Fox, et al.. (2016). Recent evolution of the salivary mucin MUC7. Scientific Reports. 6(1). 31791–31791. 25 indexed citations

14.

Pavlidis, Pavlos, Dirk Metzler, & Wolfgang Stephan. (2012). Selective Sweeps in Multilocus Models of Quantitative Traits. Genetics. 192(1). 225–239. 41 indexed citations

15.

Bousios, Alexandros, et al.. (2011). The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story. The Plant Journal. 69(3). 475–488. 26 indexed citations

16.

Svetec, Nicolas, Pavlos Pavlidis, José M. Álvarez-Castro, et al.. (2010). Identification of X-linked quantitative trait loci affecting cold tolerance in Drosophila melanogaster and fine mapping by selective sweep analysis. Molecular Ecology. 20(3). 530–544. 23 indexed citations

17.

Pavlidis, Pavlos, Stefan Laurent, & Wolfgang Stephan. (2010). msABC: a modification of Hudson’s ms to facilitate multi‐locus ABC analysis. Molecular Ecology Resources. 10(4). 723–727. 64 indexed citations

18.

Svetec, Nicolas, Pavlos Pavlidis, & Wolfgang Stephan. (2009). Recent Strong Positive Selection on Drosophila melanogaster HDAC6, a Gene Encoding a Stress Surveillance Factor, as Revealed by Population Genomic Analysis. Molecular Biology and Evolution. 26(7). 1549–1556. 16 indexed citations

19.

Johnsen, Jill M., Meike Teschke, Pavlos Pavlidis, et al.. (2008). Selection on cis-Regulatory Variation at B4galnt2 and Its Influence on von Willebrand Factor in House Mice. Molecular Biology and Evolution. 26(3). 567–578. 18 indexed citations

20.

Pavlidis, Pavlos & Panayiota Poirazi. (2006). Individualized markers optimize class prediction of microarray data. BMC Bioinformatics. 7(1). 345–345. 4 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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