Tomáš Flouri

29.3k total citations · 7 hit papers
64 papers, 16.5k citations indexed

About

Tomáš Flouri is a scholar working on Molecular Biology, Genetics and Artificial Intelligence. According to data from OpenAlex, Tomáš Flouri has authored 64 papers receiving a total of 16.5k indexed citations (citations by other indexed papers that have themselves been cited), including 47 papers in Molecular Biology, 32 papers in Genetics and 17 papers in Artificial Intelligence. Recurrent topics in Tomáš Flouri's work include Genomics and Phylogenetic Studies (44 papers), Genetic diversity and population structure (30 papers) and Algorithms and Data Compression (14 papers). Tomáš Flouri is often cited by papers focused on Genomics and Phylogenetic Studies (44 papers), Genetic diversity and population structure (30 papers) and Algorithms and Data Compression (14 papers). Tomáš Flouri collaborates with scholars based in United Kingdom, Germany and United States. Tomáš Flouri's co-authors include Alexandros Stamatakis, Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Ben Nichols, Kassian Kobert, Jiajie Zhang, Diego Darriba, Benoît Morel and Alexey M. Kozlov and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Bioinformatics and Current Biology.

In The Last Decade

Tomáš Flouri

61 papers receiving 16.4k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

VSEARCH: a versatile open source tool for metagenomics

2016 7.2k citations Tomáš Flouri et al. profile →
PEAR: a fast and accurate Illumina Paired-End reAd mergeR

2013 3.2k citations Kassian Kobert, Tomáš Flouri et al. Bioinformatics profile →
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

2019 2.5k citations Alexey M. Kozlov, Diego Darriba et al. Bioinformatics profile →
ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

2019 1.2k citations Diego Darriba, David Posada et al. Molecular Biology and Evolution profile →
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo

2017 678 citations Paschalia Kapli, Sarah Lutteropp et al. Bioinformatics profile →
EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

2018 398 citations Alexey M. Kozlov, Benoît Morel et al. Systematic Biology profile →
Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent

2018 285 citations Tomáš Flouri, Xiyun Jiao et al. Molecular Biology and Evolution profile →

Peers

Countries citing papers authored by Tomáš Flouri

Since Specialization

Citations

This map shows the geographic impact of Tomáš Flouri's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tomáš Flouri with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tomáš Flouri more than expected).

Fields of papers citing papers by Tomáš Flouri

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tomáš Flouri. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tomáš Flouri. The network helps show where Tomáš Flouri may publish in the future.

Co-authorship network of co-authors of Tomáš Flouri

This figure shows the co-authorship network connecting the top 25 collaborators of Tomáš Flouri. A scholar is included among the top collaborators of Tomáš Flouri based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Tomáš Flouri. Tomáš Flouri is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	Inference of Cross-Species Gene Flow Using Genomic Data Depends on the Methods: Case Study of Gene Flow in Drosophila 2025 ·Systematic Biology ·Jiayi Ji, (unknown), Tomáš Flouri, Ziheng Yang	1
2	Inference of Gene Flow between Species from Genomic Data When the Mode, Direction, and Lineages are Misspecified 2025 ·Molecular Biology and Evolution ·Yuttapong Thawornwattana, Tomáš Flouri, James Mallet, Ziheng Yang	0
3	Hierarchical Heuristic Species Delimitation Under the Multispecies Coalescent Model with Migration 2024 ·Systematic Biology ·(unknown), Xiyun Jiao, Jiayi Ji, Tomáš Flouri, Ziheng Yang	12
4	Inferring the Direction of Introgression Using Genomic Sequence Data 2023 ·Molecular Biology and Evolution ·Yuttapong Thawornwattana, Jun Huang, Tomáš Flouri, James Mallet, Ziheng Yang	14
5	Estimation of Cross-Species Introgression Rates Using Genomic Data Despite Model Unidentifiability 2022 ·Molecular Biology and Evolution ·Ziheng Yang, Tomáš Flouri	10
6	Inference of Gene Flow between Species under Misspecified Models 2022 ·Molecular Biology and Evolution ·Jun Huang, Yuttapong Thawornwattana, Tomáš Flouri, James Mallet, Ziheng Yang	14
7	Phase Resolution of Heterozygous Sites in Diploid Genomes is Important to Phylogenomic Analysis under the Multispecies Coalescent Model 2021 ·Systematic Biology ·Jun Huang, (unknown), Tomáš Flouri, Adam D. Leaché, Ziheng Yang	16
8	SPART: A versatile and standardized data exchange format for species partition information 2021 ·Molecular Ecology Resources ·Aurélien Miralles, (unknown), Sophie Brouillet, Tomáš Flouri, Tomochika Fujisawa, Paschalia Kapli, L. Lacey Knowles, (unknown), Alexandros Stamatakis, Jeet Sukumaran, Sarah Lutteropp, Miguel Vences, Nicolas Puillandre	11
9	Systematic errors in phylogenetic trees 2021 ·Current Biology ·Paschalia Kapli, Tomáš Flouri, Maximilian J. Telford	33
10	The Impact of Cross-Species Gene Flow on Species Tree Estimation 2020 ·Systematic Biology ·Xiyun Jiao, Tomáš Flouri, Bruce Rannala, Ziheng Yang	33
11	A Bayesian Implementation of the Multispecies Coalescent Model with Introgression for Phylogenomic Analysis 2019 ·Molecular Biology and Evolution ·Tomáš Flouri, Xiyun Jiao, Bruce Rannala, Ziheng Yang	117
12	ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models breakdown → 2019 ·Molecular Biology and Evolution ·Diego Darriba, David Posada, Alexey M. Kozlov, Alexandros Stamatakis, Benoît Morel, Tomáš Flouri	1226
13	RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference breakdown → 2019 ·Bioinformatics ·Alexey M. Kozlov, Diego Darriba, Tomáš Flouri, Benoît Morel, Alexandros Stamatakis	2509
14	Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo breakdown → 2017 ·Bioinformatics ·Paschalia Kapli, Sarah Lutteropp, Jian Zhang, Kassian Kobert, Pavlos Pavlidis, Alexandros Stamatakis, Tomáš Flouri	678
15	Efficient Detection of Repeating Sites to Accelerate Phylogenetic Likelihood Calculations 2016 ·Systematic Biology ·Kassian Kobert, Alexandros Stamatakis, Tomáš Flouri	16
16	Longest common substrings with k mismatches 2015 ·Information Processing Letters ·Tomáš Flouri, (unknown), Kassian Kobert, Esko Ukkonen	15
17	GapMis: a Tool for Pairwise Sequence Alignment with a Single Gap 2013 ·PubMed ·Tomáš Flouri, (unknown), Costas S. Iliopoulos, Kunsoo Park, Solon P. Pissis, German Tischler	6
18	Enhanced string covering 2013 ·Theoretical Computer Science ·Tomáš Flouri, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Simon J. Puglisi, W.F. Smyth, (unknown)	12
19	New and efficient approaches to the quasiperiodic characterisation of a string 2012 ·UWA Profiles and Research Repository (University of Western Australia) ·Tomáš Flouri, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Simon J. Puglisi, William F. Smyth, (unknown)	1
20	Arbology: Trees and pushdown automata 2012 ·Kybernetika ·Bořivoj Melichar, (unknown), Tomáš Flouri	3

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact