Othman Soufan

7.6k total citations · 3 hit papers
19 papers, 5.0k citations indexed

About

Othman Soufan is a scholar working on Molecular Biology, Computational Theory and Mathematics and Pollution. According to data from OpenAlex, Othman Soufan has authored 19 papers receiving a total of 5.0k indexed citations (citations by other indexed papers that have themselves been cited), including 14 papers in Molecular Biology, 6 papers in Computational Theory and Mathematics and 3 papers in Pollution. Recurrent topics in Othman Soufan's work include Gene expression and cancer classification (7 papers), Computational Drug Discovery Methods (6 papers) and Bioinformatics and Genomic Networks (6 papers). Othman Soufan is often cited by papers focused on Gene expression and cancer classification (7 papers), Computational Drug Discovery Methods (6 papers) and Bioinformatics and Genomic Networks (6 papers). Othman Soufan collaborates with scholars based in Canada, Saudi Arabia and Japan. Othman Soufan's co-authors include Jianguo Xia, Shuzhao Li, Guangyan Zhou, Jasmine Chong, Carin Li, David S. Wishart, Iurie Caraus, Guillaume Bourque, Niladri Basu and Jessica Ewald and has published in prestigious journals such as Nucleic Acids Research, Environmental Science & Technology and Bioinformatics.

In The Last Decade

Othman Soufan

19 papers receiving 5.0k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

2018 2.8k citations Jasmine Chong, Othman Soufan et al. Nucleic Acids Research profile →
NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis

2019 1.2k citations Guangyan Zhou, Othman Soufan et al. Nucleic Acids Research profile →
miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology

2020 569 citations Le Chang, Guangyan Zhou et al. Nucleic Acids Research profile →

Peers

Countries citing papers authored by Othman Soufan

Since Specialization

Citations

This map shows the geographic impact of Othman Soufan's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Othman Soufan with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Othman Soufan more than expected).

Fields of papers citing papers by Othman Soufan

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Othman Soufan. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Othman Soufan. The network helps show where Othman Soufan may publish in the future.

Co-authorship network of co-authors of Othman Soufan

This figure shows the co-authorship network connecting the top 25 collaborators of Othman Soufan. A scholar is included among the top collaborators of Othman Soufan based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Othman Soufan. Othman Soufan is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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19 of 19 papers shown

#	Work	Indexed citations
1	Characterizing toxicity pathways of fluoxetine to predict adverse outcomes in adult fathead minnows (Pimephales promelas) 2022 ·The Science of The Total Environment ·(unknown), Alper James Alcaraz, (unknown), Bradley Park, Jianguo Xia, Othman Soufan, (unknown), David Potěšil, Zbyněk Zdráhal, Doug Crump, Niladri Basu, Natacha Hogan, Markus Hecker	8
2	A novel graph mining approach to predict and evaluate food-drug interactions 2022 ·Scientific Reports ·(unknown), (unknown), Arturo Magana-Mora, Jacob Levman, Othman Soufan	22
3	Hepatic Transcriptomic Responses to Ethinylestradiol in Two Life Stages of Japanese Quail 2022 ·Environmental Toxicology and Chemistry ·(unknown), Doug Crump, (unknown), Othman Soufan, Bradley Park, Niladri Basu, Markus Hecker, Jianguo Xia, Jessica Head	3
4	Development of a Comprehensive Toxicity Pathway Model for 17α-Ethinylestradiol in Early Life Stage Fathead Minnows (Pimephales promelas) 2021 ·Environmental Science & Technology ·Alper James Alcaraz, David Potěšil, (unknown), (unknown), Bradley Park, (unknown), Kerstin Bluhm, Othman Soufan, (unknown), (unknown), Markus Brinkmann, Jianguo Xia, Zbyněk Zdráhal, David J. Schneider, Doug Crump, Niladri Basu, Natacha Hogan, Markus Hecker	20
5	EcoToxXplorer: Leveraging Design Thinking to Develop a Standardized Web-Based Transcriptomics Analytics Platform for Diverse Users 2021 ·Environmental Toxicology and Chemistry ·Othman Soufan, Jessica Ewald, Guangyan Zhou, Orçun Haçarız, (unknown), Alper James Alcaraz, Gordon M. Hickey, Steve Maguire, (unknown), Natacha Hogan, Markus Hecker, Doug Crump, Jessica Head, Niladri Basu, Jianguo Xia	12
6	FastBMD: an online tool for rapid benchmark dose–response analysis of transcriptomics data 2020 ·Bioinformatics ·Jessica Ewald, Othman Soufan, Jianguo Xia, Niladri Basu	30
7	EcoToxModules: Custom Gene Sets to Organize and Analyze Toxicogenomics Data from Ecological Species 2020 ·Environmental Science & Technology ·Jessica Ewald, Othman Soufan, Doug Crump, Markus Hecker, Jianguo Xia, Niladri Basu	26
8	miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology breakdown → 2020 ·Nucleic Acids Research ·Le Chang, Guangyan Zhou, Othman Soufan, Jianguo Xia	569
9	T1000: a reduced gene set prioritized for toxicogenomic studies 2019 ·PeerJ ·Othman Soufan, Jessica Ewald, Charles Viau, Doug Crump, Markus Hecker, Niladri Basu, Jianguo Xia	17
10	NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis breakdown → 2019 ·Nucleic Acids Research ·Guangyan Zhou, Othman Soufan, Jessica Ewald, Robert E. W. Hancock, Niladri Basu, Jianguo Xia	1241
11	Transcriptome and physiological analysis reveal alterations in muscle metabolisms and immune responses of grass carp (Ctenopharyngodon idellus) cultured at different stocking densities 2019 ·Aquaculture ·Honghao Zhao, Othman Soufan, Jianguo Xia, Rong Tang, Li Li, Dapeng Li	45
12	DPubChem: a web tool for QSAR modeling and high-throughput virtual screening 2018 ·Scientific Reports ·Othman Soufan, Wail Ba-Alawi, Arturo Magana-Mora, Magbubah Essack, Vladimir B. Bajić	39
13	MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis breakdown → 2018 ·Nucleic Acids Research ·Jasmine Chong, Othman Soufan, Carin Li, Iurie Caraus, Shuzhao Li, Guillaume Bourque, David S. Wishart, Jianguo Xia	2801
14	Systematic selection of chemical fingerprint features improves the Gibbs energy prediction of biochemical reactions 2018 ·Bioinformatics ·Meshari Alazmi, Hiroyuki Kuwahara, Othman Soufan, Lizhong Ding, Xin Gao	11
15	DANNP: an efficient artificial neural network pruning tool 2017 ·PeerJ Computer Science ·Mona Alshahrani, Othman Soufan, Arturo Magana-Mora, Vladimir B. Bajić	14
16	DRABAL: novel method to mine large high-throughput screening assays using Bayesian active learning 2016 ·Journal of Cheminformatics ·Othman Soufan, Wail Ba-Alawi, (unknown), Magbubah Essack, Panos Kalnis, Vladimir B. Bajić	15
17	DASPfind: new efficient method to predict drug–target interactions 2016 ·Journal of Cheminformatics ·Wail Ba-Alawi, Othman Soufan, Magbubah Essack, Panos Kalnis, Vladimir B. Bajić	69
18	DWFS: A Wrapper Feature Selection Tool Based on a Parallel Genetic Algorithm 2015 ·PLoS ONE ·Othman Soufan, Dimitrios Kleftogiannis, Panos Kalnis, Vladimir B. Bajić	81
19	Mining Chemical Activity Status from High-Throughput Screening Assays 2015 ·PLoS ONE ·Othman Soufan, Wail Ba-Alawi, (unknown), Magbubah Essack, Valentin O. Rodionov, Panos Kalnis, Vladimir B. Bajić	12

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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