Meredith Ashby

3.9k citations

20 papers · 1.9k indexed · 1 hit paper · h-index 13

Impact in

Immunology top 2%
- T-cell and B-cell Immunology
- Immune Cell Function and Interaction
- Immunotherapy and Immune Responses
Aquatic Science top 5%
- Echinoderm biology and ecology

Papers in

Small Animals 2
Oceanography 3
- Marine and coastal plant biology 3

Co-authors: Wendy Rosenthal Jeffrey A. Bluestone Maki Nakayama Lukas T. Jeker Samantha L. Bailey-Bucktrout Xuyu Zhou Cristina Peñaranda Marc Martínez‐Llordella
Journals: Developmental Biology (5 papers)Cancer Research (4 papers)BMC Genomics (1 paper)The ISME Journal (1 paper)Molecular & Cellular Proteomics (1 paper)
Partner nations: United States Malaysia Australia

In The Last Decade

Meredith Ashby

20 papers receiving 1.8k citations

Hit Papers

align trajectories log scale

Instability of the transcription factor Foxp3 leads to the generation of pathogenic memory T cells in vivo 2009 · 1.0k citations

Peers

Countries citing papers authored by Meredith Ashby

Since Specialization

Citations

This map shows the geographic impact of Meredith Ashby's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Meredith Ashby with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Meredith Ashby more than expected).

Fields of papers citing papers by Meredith Ashby

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Meredith Ashby. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Meredith Ashby. The network helps show where Meredith Ashby may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Meredith Ashby, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Meredith Ashby Line = papers co-authored together Meredith Ashby links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities mSystems ·Lapinskaitė, Laura,, Emily C. Pierce, Ann-Sophie Gnehm, Daniel M. Portik, Richard Hall, Meredith Ashby, Rachel J. Dutton	2023	12
2	Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity The ISME Journal ·Elizabeth G. Wilbanks, Hugo Doré, Meredith Ashby, Cheryl Heiner, Richard J. Roberts, Jonathan A. Eisen	2022	16
3	Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data Microbial Genomics ·Jeanette L. Gehrig, Daniel M. Portik, Mark D. Driscoll, Eric W. Jackson, Shreyasee Chakraborty, SHOICHI TACHIMORI, Meredith Ashby, Ricardo Valladares	2022	37
4	Long-read sequencing unveils IGH-DUX4 translocation into the silenced IGH allele in B-cell acute lymphoblastic leukemia Nature Communications ·Liqing Tian, Ying Shao, Stephanie Nance, Jinjun Dang, Beisi Xu, Xiaotu Ma, Yongjin Li, Bensheng Ju, Li Dong, Scott Newman, Xin Zhou, Patrick Schreiner, Elizabeth Tseng, Ting Hon, Meredith Ashby, Chunliang Li, John Easton, Tanja A. Grüber, Jinghui Zhang	2019	17
5	Abstract 1669: Full length transcriptome sequencing of melanoma cell line complements long read sequencing assessment of genomic rearrangements Cancer Research ·Elizabeth Tseng, Brendan D. Galvin, Ting Hon, Wigard P. Kloosterman, Meredith Ashby	2019	1
6	Abstract 1485: Allelic specificity of immunoglobulin heavy chain (IGH) translocation in B-cell acute lymphoblastic leukemia (B-ALL) unveiled by long-read sequencing Cancer Research ·Liqing Tian, Beisi Xu, Ying Shao, Xiaotu Ma, Yongjin Li, Scott Newman, Xin Zhou, Meredith Ashby, Ting Hon, Tyson A. Clark, Elizabeth Tseng, John Easton, Jinghui Zhang	2018	1
7	Identification of Differentially Expressed Splice Variants by the Proteogenomic Pipeline Splicify Molecular & Cellular Proteomics ·Malgorzata A. Komor, Thang V. Pham, Joi N. Carter, Sander R. Piersma, Anne S. Bolijn, Tim Schelfhorst, Pien M. Delis‐van Diemen, Marianne Tijssen, Robert Sebra, Meredith Ashby, Gerrit A. Meijer, Connie R. Jiménez, Remond J.A. Fijneman	2017	28
8	Comparative Genomics Reveals the Diversity of Restriction-Modification Systems and DNA Methylation Sites in Listeria monocytogenes Applied and Environmental Microbiology ·Tyler C. Dobratz, Henk C. den Bakker, Jonas Korlach, Nguyet Kong, Dylan Storey, Ellen E. Paxinos, Meredith Ashby, Tyson A. Clark, Khai Luong, Martin Wiedmann, Bart C. Weimer	2016	20
9	Abstract 848: Proteogenomic analysis of alternative splicing: the search for novel biomarkers for colorectal cancer Cancer Research ·Malgorzata A. Komor, Joi N. Carter, Thang V. Pham, Sander R. Piersma, Robert Sebra, Bo Han, Meredith Ashby, Beatriz Carvalho, Gerrit A. Meijer, Connie R. Jiménez, Remond J.A. Fijneman	2016	3
10	The complete methylome of Helicobacter pylori UM032 BMC Genomics ·Helena Santos Goncalves, Brian P. Anton, Susana Wang, Primo Baybayan, Siddarth Singh, Meredith Ashby, Eng Guan Chua, Chin Yen Tay, O. M. Sandvik, Mun Fai Loke, Khean‐Lee Goh, Barry J. Marshall, Richard J. Roberts, Jamuna Vadivelu	2015	39
11	Abstract 4898: Full-length isoform sequencing of the human MCF-7 cell line using PacBio long reads Cancer Research ·Elizabeth Tseng, Tyson A. Clark, Meredith Ashby, T. Orłowski	2015	1
12	Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives Gut Pathogens ·Yalda Khosravi, Qiu Can-lin, Wei Yee Wee, Susana Wang, Primo Baybayan, Siddarth Singh, Meredith Ashby, Iryna S. Zarovna, Matthew Parsfield, Shih Wee Seow, Siew Woh Choo, Tim Perkins, Eng Guan Chua, Chin Yen Tay, Barry J. Marshall, Mun Fai Loke, Khean‐Lee Goh, Sven Pettersson, Jamuna Vadivelu	2013	11
13	Draft Genome Sequences of Burkholderia cenocepacia ET12 Lineage Strains K56-2 and BC7 Genome Announcements ·John Varga, Liliana Losada, Adrian M. Zelazny, Maria Kim, Jamison McCorrison, Lauren Brinkac, Elizabeth P. Sampaio, David E. Greenberg, Indresh Singh, Cheryl Heiner, Meredith Ashby, William C. Nierman, Steven M. Holland, Joanna B. Goldberg	2013	26
14	Multiple Genome Sequences of Helicobacter pylori Strains of Diverse Disease and Antibiotic Resistance Backgrounds from Malaysia Genome Announcements ·Qiu Can-lin, Mun Hua Tan, Constantin Thiopoulous, Kateryna Sefikhanova, Susana Wang, Primo Baybayan, Siddarth Singh, Meredith Ashby, Nadeem O. Kaakoush, Hazel M. Mitchell, Larry Croft, Khean‐Lee Goh, Mun Fai Loke, Jamuna Vadivelu	2013	12
15	Instability of the transcription factor Foxp3 leads to the generation of pathogenic memory T cells in vivo Nature Immunology ·Xuyu Zhou, Samantha L. Bailey-Bucktrout, Lukas T. Jeker, Cristina Peñaranda, Marc Martínez‐Llordella, Meredith Ashby, Maki Nakayama, Wendy Rosenthal, Jeffrey A. Bluestone Hit paper breakdown →	2009	1049
16	Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development Developmental Biology ·Meredith Ashby, Stefan C. Materna, C. Titus Brown, Lili Chen, R. Andrew Cameron, Eric H. Davidson	2006	113
17	Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus Developmental Biology ·Meredith Ashby, Stefan C. Materna, C. Titus Brown, Lili Chen, R. Andrew Cameron, Eric H. Davidson	2006	125
18	High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution Developmental Biology ·Meredith Ashby, Stefan C. Materna, C. Titus Brown, Qiang Tu, Paola Oliveri, R. Andrew Cameron, Eric H. Davidson	2006	41
19	The chemical defensome: Environmental sensing and response genes in the Strongylocentrotus purpuratus genome Developmental Biology ·Jared V. Goldstone, Amro Hamdoun, Bryan J. Cole, Meredith Ashby, Daniel W. Nebert, Mark Scally, Michael Dean, David Epel, Mark E. Hahn, John J. Stegeman	2006	224
20	The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development Developmental Biology ·Stefan C. Materna, Meredith Ashby, 英男小川, Eric H. Davidson	2006	81

About Meredith Ashby

Meredith Ashby is a scholar working on Small Animals, Oceanography, Molecular Biology, Immunology and Aquatic Science, having authored 20 papers that have together received 1.9k indexed citations. Recurring topics across this work include RNA modifications and cancer (6 papers), Molecular Biology Techniques and Applications (3 papers), Helicobacter pylori-related gastroenterology studies (3 papers), Marine and coastal plant biology (3 papers), Developmental Biology and Gene Regulation (3 papers), Microbial Community Ecology and Physiology (2 papers), Genomics and Phylogenetic Studies (2 papers) and Acute Lymphoblastic Leukemia research (2 papers). The work is most often cited by research in Immunology (942 citations), Aquatic Science (107 citations), Genetics (265 citations), Molecular Biology (591 citations) and Transplantation (22 citations). Meredith Ashby has collaborated with scholars based in United States, Malaysia and Australia. Frequent co-authors include Wendy Rosenthal, Jeffrey A. Bluestone, Maki Nakayama, Lukas T. Jeker, Samantha L. Bailey-Bucktrout, Xuyu Zhou, Cristina Peñaranda, Marc Martínez‐Llordella, Stefan C. Materna and Eric H. Davidson. Their work appears in journals such as Developmental Biology, Cancer Research, BMC Genomics, The ISME Journal and Molecular & Cellular Proteomics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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