Mark T. Holder

6.8k total citations · 2 hit papers
47 papers, 4.5k citations indexed

About

Mark T. Holder is a scholar working on Molecular Biology, Genetics and Paleontology. According to data from OpenAlex, Mark T. Holder has authored 47 papers receiving a total of 4.5k indexed citations (citations by other indexed papers that have themselves been cited), including 31 papers in Molecular Biology, 22 papers in Genetics and 16 papers in Paleontology. Recurrent topics in Mark T. Holder's work include Genomics and Phylogenetic Studies (28 papers), Genetic diversity and population structure (17 papers) and Evolution and Paleontology Studies (15 papers). Mark T. Holder is often cited by papers focused on Genomics and Phylogenetic Studies (28 papers), Genetic diversity and population structure (17 papers) and Evolution and Paleontology Studies (15 papers). Mark T. Holder collaborates with scholars based in United States, United Kingdom and Canada. Mark T. Holder's co-authors include Jeet Sukumaran, Paul O. Lewis, Brian E. Leveridge, Derrick J. Zwickl, Kent E. Holsinger, Michael E. Alfaro, David L. Swofford, John P. Huelsenbeck, Alisha K. Holloway and Jennifer A. Anderson and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Bioinformatics and Nature Reviews Genetics.

In The Last Decade

Mark T. Holder

47 papers receiving 4.3k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

DendroPy: a Python library for phylogenetic computing

2010 1.2k citations Jeet Sukumaran, Mark T. Holder Bioinformatics profile →
BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

2011 461 citations Derrick J. Zwickl, Mark T. Holder et al. Systematic Biology profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Mark T. Holder United States	27	2.0k	1.5k	1.1k	958	730	47	4.5k
Laura Kubatko United States	27	2.4k 1.2×	2.7k 1.8×	1.2k 1.2×	747 0.8×	780 1.1×	64	4.8k
Jonathan P. Bollback United States	20	2.4k 1.2×	2.0k 1.3×	1.7k 1.6×	1.4k 1.5×	990 1.4×	39	6.0k
François‐Joseph Lapointe Canada	32	1.1k 0.5×	1.2k 0.8×	874 0.8×	885 0.9×	519 0.7×	98	3.3k
Derrick J. Zwickl United States	20	1.6k 0.8×	1.2k 0.8×	1.0k 1.0×	485 0.5×	588 0.8×	24	3.2k
Pavlos Pavlidis Greece	23	1.5k 0.8×	2.0k 1.3×	1.1k 1.1×	1.3k 1.3×	332 0.5×	58	4.8k
Benoît Nabholz France	30	1.9k 1.0×	2.4k 1.6×	893 0.8×	1.2k 1.2×	329 0.5×	56	4.1k
M. Hasegawa Japan	19	3.1k 1.6×	1.9k 1.2×	1.5k 1.4×	1.5k 1.5×	696 1.0×	32	5.9k
Denise Kühnert Germany	22	1.9k 1.0×	2.5k 1.7×	1.7k 1.6×	1.3k 1.4×	909 1.2×	42	6.6k
Jeffrey L. Thorne United States	24	2.6k 1.3×	1.8k 1.2×	1.2k 1.1×	534 0.6×	1.1k 1.6×	47	4.3k
David P. Mindell United States	30	1.2k 0.6×	1.8k 1.2×	758 0.7×	1.1k 1.1×	726 1.0×	65	3.8k

Countries citing papers authored by Mark T. Holder

Since Specialization

Citations

This map shows the geographic impact of Mark T. Holder's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Mark T. Holder with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Mark T. Holder more than expected).

Fields of papers citing papers by Mark T. Holder

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Mark T. Holder. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Mark T. Holder. The network helps show where Mark T. Holder may publish in the future.

Co-authorship network of co-authors of Mark T. Holder

This figure shows the co-authorship network connecting the top 25 collaborators of Mark T. Holder. A scholar is included among the top collaborators of Mark T. Holder based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Mark T. Holder. Mark T. Holder is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Redelings, Benjamin D. & Mark T. Holder. (2024). Speeding up iterative applications of the BUILD supertree algorithm. PeerJ. 12. e16624–e16624. 1 indexed citations

McTavish, Emily Jane, Luna L. Sánchez‐Reyes, & Mark T. Holder. (2021). OpenTree: A Python Package for Accessing and Analyzing Data from the Open Tree of Life. Systematic Biology. 70(6). 1295–1301. 8 indexed citations

Sukumaran, Jeet, Mark T. Holder, & L. Lacey Knowles. (2021). Incorporating the speciation process into species delimitation. PLoS Computational Biology. 17(5). e1008924–e1008924. 74 indexed citations

Redelings, Benjamin D. & Mark T. Holder. (2017). A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species. PeerJ. 5. e3058–e3058. 41 indexed citations

McTavish, Emily Jane, Cody E. Hinchliff, Joseph W. Brown, et al.. (2015). Phylesystem: a git-based data store for community-curated phylogenetic estimates. Bioinformatics. 31(17). 2794–2800. 26 indexed citations

Oaks, Jamie R., Jeet Sukumaran, Jacob A. Esselstyn, et al.. (2012). EVIDENCE FOR CLIMATE-DRIVEN DIVERSIFICATION? A CAUTION FOR INTERPRETING ABC INFERENCES OF SIMULTANEOUS HISTORICAL EVENTS. Evolution. 67(4). 991–1010. 53 indexed citations

Vos, Rutger, James P. Balhoff, Jason Caravas, et al.. (2012). NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata. Systematic Biology. 61(4). 675–689. 70 indexed citations

Heath, Tracy A., Mark T. Holder, & John P. Huelsenbeck. (2011). A Dirichlet Process Prior for Estimating Lineage-Specific Substitution Rates. Molecular Biology and Evolution. 29(3). 939–955. 67 indexed citations

Holder, Mark T. & Mike Steel. (2011). Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts. Journal of Theoretical Biology. 280(1). 159–166. 2 indexed citations

10.

Evans, Nathaniel, Mark T. Holder, Marcos S. Barbeitos, Beth Okamura, & Josephine A. Wright. (2010). The Phylogenetic Position of Myxozoa: Exploring Conflicting Signals in Phylogenomic and Ribosomal Data Sets. Molecular Biology and Evolution. 27(12). 2733–2746. 60 indexed citations

11.

Sukumaran, Jeet & Mark T. Holder. (2010). DendroPy: a Python library for phylogenetic computing. Bioinformatics. 26(12). 1569–1571. 1210 indexed citations breakdown →

12.

Sukumaran, Jeet & Mark T. Holder. (2010). Ginkgo: spatially‐explicit simulator of complex phylogeographic histories. Molecular Ecology Resources. 11(2). 364–369. 1 indexed citations

13.

Alfaro, Michael E. & Mark T. Holder. (2006). The Posterior and the Prior in Bayesian Phylogenetics. Annual Review of Ecology Evolution and Systematics. 37(1). 19–42. 150 indexed citations

14.

Lewis, Paul O., Mark T. Holder, & Kent E. Holsinger. (2005). Polytomies and Bayesian Phylogenetic Inference. Systematic Biology. 54(2). 241–253. 256 indexed citations

15.

Holder, Mark T. & Paul O. Lewis. (2003). Phylogeny estimation: traditional and Bayesian approaches. Nature Reviews Genetics. 4(4). 275–284. 425 indexed citations

16.

Brauer, Matthew J., et al.. (2002). Genetic Algorithms and Parallel Processing in Maximum-Likelihood Phylogeny Inference. Molecular Biology and Evolution. 19(10). 1717–1726. 62 indexed citations

17.

Holder, Mark T.. (2001). Using a complex model of sequence evolution to evaluate and improve phylogenetic methods. Texas ScholarWorks (Texas Digital Library). 2 indexed citations

18.

Burns, B. M., Jeremy F. Taylor, A. D. Herring, et al.. (1995). Bovine microsatellite mononucleotide and dinucleotide repeat polymorphisms at the TEXAN6, TEXAN7, TEXAN8, TEXAN9 and TEXAN10 loci. Animal Genetics. 26(2). 128–129. 10 indexed citations

19.

Burns, B. M., Jeremy F. Taylor, A. D. Herring, et al.. (1995). Bovine microsatellite dinucleotide repeat polymorphisms at the TEXAN16, TEXAN17, TEXAN18, TEXAN19 and TEXAN20 loci. Animal Genetics. 26(3). 208–209. 22 indexed citations

20.

Arevalo, Elorri, et al.. (1994). Bovine microsatellite dinucleotide repeat polymorphisms at the TEXAN‐1, TEXAN‐2, TEXAN‐3, TEXAN‐4 and TEXAN‐5 loci. Animal Genetics. 25(3). 201–201. 8 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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