John P. Huelsenbeck

114.4k citations

107 papers · 92.9k indexed · 20 hit papers · h-index 65

Molecular Biology top 0.02%
Ecology, Evolution, Behavior and Systematics top 0.01%
Genetics top 0.01%
Ecology top 0.01%
Plant Science top 0.01%

Co-authors: Fredrik Ronquist Bret Larget Marc A. Suchard Sebastian Höhna Daniel L. Ayres Aaron E. Darling Paul van der Mark Liang Liu
Topics: Genomics and Phylogenetic Studies (68 papers)Genetic diversity and population structure (60 papers)Evolution and Paleontology Studies (45 papers)
Cited by: Paleontology Ecology, Evolution, Behavior and Systematics Ecological Modeling
Journals: Science Proceedings of the National Academy of Sciences Bioinformatics
Partner nations: United States Sweden Saudi Arabia

In The Last Decade

John P. Huelsenbeck

107 papers receiving 90.0k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

MrBayes 3: Bayesian phylogenetic inference under mixed models

2003 25.4k citations Fredrik Ronquist, John P. Huelsenbeck Bioinformatics profile →
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

2012 20.9k citations Fredrik Ronquist, John P. Huelsenbeck et al. Systematic Biology profile →
MRBAYES: Bayesian inference of phylogenetic trees

2001 19.3k citations John P. Huelsenbeck, Fredrik Ronquist Bioinformatics profile →
MRBAYES: Bayesian inference of phylogeny

2001 4.5k citations John P. Huelsenbeck, Fredrik Ronquist Bioinformatics profile →
Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology

2001 2.2k citations John P. Huelsenbeck, Fredrik Ronquist et al. profile →
Bayesian Phylogenetic Analysis of Combined Data

2004 1.6k citations Fredrik Ronquist, John P. Huelsenbeck et al. Systematic Biology profile →
Signal, Noise, and Reliability in Molecular Phylogenetic Analyses

1992 1.2k citations John P. Huelsenbeck et al. profile →
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference

2004 916 citations John P. Huelsenbeck, Fredrik Ronquist et al. Bioinformatics profile →
Phylogeny Estimation and Hypothesis Testing Using Maximum Likelihood

1997 904 citations John P. Huelsenbeck et al. profile →
Partitioning and Combining Data in Phylogenetic Analysis

1993 770 citations John P. Huelsenbeck, Cliff Cunningham et al. Systematic Biology profile →
Combining data in phylogenetic analysis

1996 751 citations John P. Huelsenbeck, J. J. Bull et al. Trends in Ecology & Evolution profile →
Frequentist Properties of Bayesian Posterior Probabilities of Phylogenetic Trees Under Simple and Complex Substitution Models

2004 743 citations John P. Huelsenbeck, Bruce Rannala Systematic Biology profile →
Stochastic Mapping of Morphological Characters

2003 722 citations John P. Huelsenbeck, Rasmus Nielsen et al. Systematic Biology profile →
Phylogenetic Methods Come of Age: Testing Hypotheses in an Evolutionary Context

1997 692 citations John P. Huelsenbeck, Bruce Rannala profile →
Potential Applications and Pitfalls of Bayesian Inference of Phylogeny

2002 683 citations John P. Huelsenbeck, Fredrik Ronquist et al. Systematic Biology profile →
Bayesian Analysis of Biogeography when the Number of Areas is Large

2013 624 citations John P. Huelsenbeck et al. Systematic Biology profile →
Success of Phylogenetic Methods in the Four-Taxon Case

1993 609 citations John P. Huelsenbeck et al. Systematic Biology profile →
The fossilized birth–death process for coherent calibration of divergence-time estimates

2014 528 citations Tracy A. Heath, John P. Huelsenbeck et al. profile →
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

2016 499 citations Tracy A. Heath, John P. Huelsenbeck et al. Systematic Biology profile →
BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

2011 461 citations Mark T. Holder, John P. Huelsenbeck et al. Systematic Biology profile →

Peers

Countries citing papers authored by John P. Huelsenbeck

Since Specialization

Citations

This map shows the geographic impact of John P. Huelsenbeck's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by John P. Huelsenbeck with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites John P. Huelsenbeck more than expected).

Fields of papers citing papers by John P. Huelsenbeck

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by John P. Huelsenbeck. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by John P. Huelsenbeck. The network helps show where John P. Huelsenbeck may publish in the future.

Co-authorship network of co-authors of John P. Huelsenbeck

This figure shows the co-authorship network connecting the top 25 collaborators of John P. Huelsenbeck. A scholar is included among the top collaborators of John P. Huelsenbeck based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with John P. Huelsenbeck. John P. Huelsenbeck is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	A COMPARATIVE ANALYSIS OF DE NOVO TRANSCRIPTOME ASSEMBLY TO UNDERSTAND THE ABIOTIC STRESS ADAPTATION OF DESERT PLANTS IN SAUDI ARABIA 2021 ·Applied Ecology and Environmental Research ·Mohammed N. Baeshen,Firoz Ahmed,Tarek A. A. Moussa,Aala A. Abulfaraj,Rewaa S. Jalal,(unknown),Nabih A. Baeshen,John P. Huelsenbeck	2
2	Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny 2020 ·Molecular Biology and Evolution ·Lenore Pipes,Hongru Wang,John P. Huelsenbeck,Rasmus Nielsen	28
3	Using Parsimony-Guided Tree Proposals to Accelerate Convergence in Bayesian Phylogenetic Inference 2020 ·Systematic Biology ·Chi Zhang,John P. Huelsenbeck,Fredrik Ronquist	18
4	DIVERSITY PROFILING OF ASSOCIATED BACTERIA FROM THE SOILS OF STRESS TOLERANT PLANTS FROM SEACOAST OF JEDDAH, SAUDI ARABIA 2020 ·Applied Ecology and Environmental Research ·(unknown),Tarek A. A. Moussa,Firoz Ahmed,Aala A. Abulfaraj,Rewaa S. Jalal,(unknown),Nabih A. Baeshen,John P. Huelsenbeck	6
5	A Dirichlet Process Prior for Estimating Lineage-Specific Substitution Rates 2011 ·Molecular Biology and Evolution ·Tracy A. Heath,Mark T. Holder,John P. Huelsenbeck	67
6	Bayesian Inference of the Metazoan Phylogeny 2005 ·Current Biology ·Henrik Glenner,Anders J. Hansen,Martin V. Sørensen,(unknown),John P. Huelsenbeck,Eske Willerslev	4
7	Bayesian Estimation of Positively Selected Sites 2004 ·Journal of Molecular Evolution ·John P. Huelsenbeck,Kelly A. Dyer	60
8	Stochastic Mapping of Morphological Charactersbreakdown → 2003 ·Systematic Biology ·John P. Huelsenbeck,Rasmus Nielsen,Jonathan P. Bollback	722
9	Testing a Covariotide Model of DNA Substitution 2002 ·Molecular Biology and Evolution ·John P. Huelsenbeck	141
10	Geographic Origin of Human Mitochondrial DNA: Accommodating Phylogenetic Uncertainty and Model Comparison 2002 ·Systematic Biology ·John P. Huelsenbeck,(unknown)	113
11	MRBAYES: Bayesian inference of phylogenybreakdown → 2001 ·Bioinformatics ·John P. Huelsenbeck,Fredrik Ronquist	4506
12	Phylogeny, Genome Evolution, and Host Specificity of Single-Stranded RNA Bacteriophage (Family Leviviridae) 2001 ·Journal of Molecular Evolution ·Jonathan P. Bollback,John P. Huelsenbeck	69
13	Effect of Nonindependent Substitution on Phylogenetic Accuracy 1999 ·Systematic Biology ·John P. Huelsenbeck,Rasmus Nielsen	39
14	Taxon Sampling and the Accuracy of Large Phylogenies 1998 ·Systematic Biology ·Bruce Rannala,John P. Huelsenbeck,Ziheng Yang,Rasmus Nielsen	203
15	Is the Felsenstein Zone a Fly Trap? 1997 ·Systematic Biology ·John P. Huelsenbeck	236
16	STATISTICAL TESTS OF HOST-PARASITE COSPECIATION 1997 ·Evolution ·John P. Huelsenbeck,Bruce Rannala,Ziheng Yang	93
17	Maximum likelihood estimation of phylogeny using stratigraphic data 1997 ·Paleobiology ·John P. Huelsenbeck,Bruce Rannala	56
18	Combining data in phylogenetic analysisbreakdown → 1996 ·Trends in Ecology & Evolution ·John P. Huelsenbeck,J. J. Bull,Cliff Cunningham	751
19	Comparing the stratigraphic record to estimates of phylogeny 1994 ·Paleobiology ·John P. Huelsenbeck	186
20	Seasonal variation in brood structure of Transennella confusa (bivalvia: Veneridae) 1989 ·The Veliger ·Michael P. Russell,John P. Huelsenbeck	11

About John P. Huelsenbeck

John P. Huelsenbeck is a scholar working on Paleontology, Genetics and Molecular Biology, having authored 107 papers that have together received 92.9k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (68 papers), Genetic diversity and population structure (60 papers) and Evolution and Paleontology Studies (45 papers). The work is most often cited by research in Paleontology (11.3k citations), Ecology, Evolution, Behavior and Systematics (29.2k citations) and Ecological Modeling (4.2k citations). John P. Huelsenbeck has collaborated with scholars based in United States, Sweden and Saudi Arabia. Frequent co-authors include Fredrik Ronquist, Bret Larget, Marc A. Suchard, Sebastian Höhna, Daniel L. Ayres, Aaron E. Darling, Paul van der Mark, Liang Liu, Maxim Teslenko and Jonathan P. Bollback. Their work appears in journals such as Science, Proceedings of the National Academy of Sciences and Bioinformatics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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