Keiichiro Ono

12.5k total citations · 3 hit papers
29 papers, 6.8k citations indexed

About

Keiichiro Ono is a scholar working on Molecular Biology, Rheumatology and Oral Surgery. According to data from OpenAlex, Keiichiro Ono has authored 29 papers receiving a total of 6.8k indexed citations (citations by other indexed papers that have themselves been cited), including 17 papers in Molecular Biology, 4 papers in Rheumatology and 4 papers in Oral Surgery. Recurrent topics in Keiichiro Ono's work include Bioinformatics and Genomic Networks (15 papers), Genetics, Bioinformatics, and Biomedical Research (4 papers) and Oral and Maxillofacial Pathology (4 papers). Keiichiro Ono is often cited by papers focused on Bioinformatics and Genomic Networks (15 papers), Genetics, Bioinformatics, and Biomedical Research (4 papers) and Oral and Maxillofacial Pathology (4 papers). Keiichiro Ono collaborates with scholars based in United States, Japan and Canada. Keiichiro Ono's co-authors include Trey Ideker, Pengliang Wang, Michael Smoot, Alexander R. Pico, Samad Lotia, Rintaro Saito, Gary D. Bader, Barry Demchak, Eigo Suyama and Joseph G. Gleeson and has published in prestigious journals such as Nature, Nucleic Acids Research and Molecular Cell.

In The Last Decade

Keiichiro Ono

24 papers receiving 6.7k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Cytoscape 2.8: new features for data integration and network visualization

2010 3.8k citations Michael Smoot, Keiichiro Ono et al. Bioinformatics profile →
A travel guide to Cytoscape plugins

2012 1.1k citations Rintaro Saito, Michael Smoot et al. Nature Methods profile →
Cytoscape 2.8: new features for data integration and network

2011 716 citations Keiichiro Ono, Pengliang Wang et al. profile →

Peers

Countries citing papers authored by Keiichiro Ono

Since Specialization

Citations

This map shows the geographic impact of Keiichiro Ono's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Keiichiro Ono with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Keiichiro Ono more than expected).

Fields of papers citing papers by Keiichiro Ono

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Keiichiro Ono. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Keiichiro Ono. The network helps show where Keiichiro Ono may publish in the future.

Co-authorship network of co-authors of Keiichiro Ono

This figure shows the co-authorship network connecting the top 25 collaborators of Keiichiro Ono. A scholar is included among the top collaborators of Keiichiro Ono based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Keiichiro Ono. Keiichiro Ono is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Cytoscape Web: bringing network biology to the browser 2025 ·Nucleic Acids Research ·Keiichiro Ono, Dylan Fong, (unknown), Christopher Churas, Rudolf Pillich, (unknown), Dexter Pratt, Alexander R. Pico, Kristina Hanspers, Yang Xin, John H. Morris, Mike Kucera, Max Franz, Christian Lopes, Gary D. Bader, (unknown), (unknown)	5
2	NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange 2023 ·Bioinformatics ·Rudolf Pillich, Jing Chen, Christopher Churas, Dylan Fong, Benjamin M. Gyori, (unknown), Klas Karis, Sophie Liu, Keiichiro Ono, Alexander R. Pico, Dexter Pratt	18
3	A multi-scale map of protein assemblies in the DNA damage response 2023 ·Cell Systems ·Anton Kratz, Minkyu Kim, Marcus R. Kelly, Fan Zheng, Christopher A. Koczor, Jianfeng Li, Keiichiro Ono, Yue Qin, Christopher Churas, Jing Chen, Rudolf Pillich, Jisoo Park, Maya Modak, (unknown), (unknown), Dexter Pratt, Robert W. Sobol, Nevan J. Krogan, Trey Ideker	14
4	NDEx: Accessing Network Models and Streamlining Network Biology Workflows 2021 ·Current Protocols ·Rudolf Pillich, Jing Chen, Christopher Churas, Sophie Liu, Keiichiro Ono, David Otasek, Dexter Pratt	18
5	DDOT: A Swiss Army Knife for Investigating Data-Driven Biological Ontologies 2019 ·Cell Systems ·Michael Yu, Jianzhu Ma, Keiichiro Ono, Fan Zheng, Samson Fong, (unknown), (unknown), Barry Demchak, Dexter Pratt, Trey Ideker	12
6	Using deep learning to model the hierarchical structure and function of a cell 2018 ·Nature Methods ·Jianzhu Ma, Michael Yu, Samson Fong, Keiichiro Ono, (unknown), Barry Demchak, Roded Sharan, Trey Ideker	267
7	Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy 2017 ·Molecular Cell ·Michael H. Kramer, Jean‐Claude Farré, (unknown), Michael Yu, Keiichiro Ono, Barry Demchak, Katherine Licon, (unknown), Rama Balakrishnan, J. Michael Cherry, Suresh Subramani, Trey Ideker	21
8	NDEx, the Network Data Exchange 2015 ·Cell Systems ·Dexter Pratt, Jing Chen, (unknown), (unknown), Rudolf Pillich, Vladimir Rynkov, Keiichiro Ono, (unknown), (unknown), Sándor Szalma, Aleksandar Stojmirović, Radu Dobrin, Michael Braxenthaler, (unknown), Barry Demchak, Trey Ideker	164
9	Metal crown impacted in the tongue: a case report 2013 ·Japanese Journal of Oral & Maxillofacial Surgery ·(unknown), Yoshihiro Takahashi, (unknown), Noriaki Yamamoto, Keiichiro Ono, Kenji Kawano	1
10	NeXO Web: the NeXO ontology database and visualization platform 2013 ·Nucleic Acids Research ·Janusz Dutkowski, Keiichiro Ono, Michael H. Kramer, Michael Yu, Dexter Pratt, Barry Demchak, Trey Ideker	10
11	A new reference implementation of the PSICQUIC web service 2013 ·Nucleic Acids Research ·Noemí del‐Toro, Marine Dumousseau, Sandra Orchard, Rafael C. Jiménez, Eugenia Galeota, Guillaume Launay, Johannes B. Goll, Karin Breuer, Keiichiro Ono, Łukasz Salwiński, Henning Hermjakob	70
12	Aggressive fibromatosis of the mandibular region: A report of an infant case 2012 ·Yoshihiro Takahashi, (unknown), Keiichiro Ono, Kenji Kawano	1
13	A travel guide to Cytoscape plugins breakdown → 2012 ·Nature Methods ·Rintaro Saito, Michael Smoot, Keiichiro Ono, (unknown), Pengliang Wang, Samad Lotia, Alexander R. Pico, Gary D. Bader, Trey Ideker	1149
14	Cytoscape 2.8: new features for data integration and network visualization breakdown → 2010 ·Bioinformatics ·Michael Smoot, Keiichiro Ono, (unknown), Pengliang Wang, Trey Ideker	3767
15	Functional genomic screen for modulators of ciliogenesis and cilium length 2010 ·Nature ·Joon Kim, Ji Eun Lee, Susanne Heynen‐Genel, Eigo Suyama, Keiichiro Ono, KiYoung Lee, Trey Ideker, Pedro Aza‐Blanc, Joseph G. Gleeson	428
16	Evidence mining and novelty assessment of protein–protein interactions with the ConsensusPathDB plugin for Cytoscape 2010 ·Bioinformatics ·(unknown), Keiichiro Ono, Ralf Herwig, Trey Ideker, Atanas Kamburov	24
17	Pyoderma Gangrenosum of the Eyelid: Report of Two Cases and Review of the Literature 2010 ·Dermatology ·(unknown), Teruki Yanagi, Masashi Akiyama, (unknown), (unknown), Yasuyuki Fujita, (unknown), Daisuke Inokuma, Satoru Kase, Keiichiro Ono, Hidehiko Minakawa, Hiroshi Shimizu	9
18	Malignant calcifying epithelial odontogenic tumor of the mandible: report of a case with pulmonary metastasis showing remarkable response to platinum derivatives 2006 ·Oral Surgery Oral Medicine Oral Pathology Oral Radiology and Endodontology ·Kenji Kawano, Keiichiro Ono, Naomi Yada, Yoshihiro Takahashi, Kenji Kashima, Shigeo Yokoyama, Shigetaka Yanagisawa	26
19	Clinical Usefulness of Determining the Rate of Thermal Clearance within Heated Tumors 1996 ·Japanese Journal of Clinical Oncology ·Shin‐ichiro Masunaga, Keiichiro Ono, Michihide Mitsumori, Yasumasa Nishimura, Masahiro Hiraoka, Keizo Akuta, Y. Nagata, Manabu Abe, Meiko Takahashi, Seong-Bae Jo	4
20	Radicality and QOL of Adenoid Cystic Carcinoma invading the Upper Jaw intraosseously with Lung Metastasis. 1995 ·Journal of Japanese Society of Oral Oncology ·Masatsugu SHIMIZU, Shigetaka Yanagisawa, Kenji Kawano, Keiichiro Ono, (unknown)	1

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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