Jonathan K. Pritchard

127.1k citations

182 papers · 77.5k indexed · 30 hit papers · h-index 92

Genetics top 0.01%
Molecular Biology top 0.05%
Plant Science top 0.01%
Ecology top 0.02%
Ecology, Evolution, Behavior and Systematics top 0.02%

Co-authors: Matthew Stephens Peter Donnelly Daniel Falush Joseph K. Pickrell Noah A. Rosenberg Yoav GiladYang LiSridhar Kudaravalli
Topics: Genetic Associations and Epidemiology (56 papers)Genetic Mapping and Diversity in Plants and Animals (35 papers)Genomics and Chromatin Dynamics (30 papers)
Cited by: Genetics Nature and Landscape Conservation Ecological Modeling
Journals: Nature Science Cell
Partner nations: United States United Kingdom Germany

In The Last Decade

Jonathan K. Pritchard

176 papers receiving 75.6k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Inference of Population Structure Using Multilocus Genotype Data

2000 27.5k citations Jonathan K. Pritchard, Matthew Stephens et al. Genetics profile →
Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies

2003 6.6k citations Daniel Falush, Matthew Stephens et al. Genetics profile →
Inference of population structure using multilocus genotype data: dominant markers and null alleles

2007 2.8k citations Daniel Falush, Matthew Stephens et al. profile →
Inferring weak population structure with the assistance of sample group information

2009 2.8k citations Daniel Falush, Matthew Stephens et al. profile →
Genetic Structure of Human Populations

2002 2.0k citations Jonathan K. Pritchard et al. Science profile →
A Map of Recent Positive Selection in the Human Genome

2006 2.0k citations Sridhar Kudaravalli, Jonathan K. Pritchard et al. profile →
An Expanded View of Complex Traits: From Polygenic to Omnigenic

2017 1.7k citations Evan A. Boyle, Yang Li et al. profile →
Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

2012 1.7k citations Joseph K. Pickrell, Jonathan K. Pritchard PLoS Genetics profile →
Association Mapping in Structured Populations

2000 1.5k citations Jonathan K. Pritchard, Matthew Stephens et al. profile →
fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

2014 1.1k citations Anil Raj, Matthew Stephens et al. Genetics profile →
Convergent adaptation of human lactase persistence in Africa and Europe

2006 937 citations Jonathan K. Pritchard et al. profile →
Understanding mechanisms underlying human gene expression variation with RNA sequencing

2010 908 citations Joseph K. Pickrell, John C. Marioni et al. Nature profile →
Linkage Disequilibrium in Humans: Models and Data

2001 885 citations Jonathan K. Pritchard, Molly Przeworski profile →
Use of Unlinked Genetic Markers to Detect Population Stratification in Association Studies

1999 882 citations Jonathan K. Pritchard et al. profile →
Are Rare Variants Responsible for Susceptibility to Complex Diseases?

2001 823 citations Jonathan K. Pritchard profile →
Traces of Human Migrations in Helicobacter pylori Populations

2003 742 citations Daniel Falush, Thierry Wirth et al. Science profile →
Population growth of human Y chromosomes: a study of Y chromosome microsatellites

1999 685 citations Jonathan K. Pritchard et al. profile →
Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

2016 656 citations Jonathan K. Pritchard, William J. Greenleaf et al. profile →
The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

2010 655 citations Jonathan K. Pritchard, Joseph K. Pickrell et al. profile →
DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

2011 633 citations Joseph K. Pickrell, Yoav Gilad et al. Genome biology profile →
Informativeness of Genetic Markers for Inference of Ancestry*

2003 554 citations Jonathan K. Pritchard et al. profile →
Signals of recent positive selection in a worldwide sample of human populations

2009 535 citations Joseph K. Pickrell, Graham Coop et al. Genome Research profile →
Using Environmental Correlations to Identify Loci Underlying Local Adaptation

2010 528 citations Graham Coop, David Witonsky et al. Genetics profile →
DNase I sensitivity QTLs are a major determinant of human expression variation

2012 429 citations Joseph K. Pickrell, Katelyn Michelini et al. Nature profile →
RNA splicing is a primary link between genetic variation and disease

2016 382 citations Yang Li, Bryce van de Geijn et al. Science profile →
Tracing the peopling of the world through genomics

2017 369 citations Jonathan K. Pritchard et al. Nature profile →
Sequencing and Analysis of Neanderthal Genomic DNA

2006 359 citations James P. Noonan, Graham Coop et al. Science profile →
Trans Effects on Gene Expression Can Drive Omnigenic Inheritance

2019 298 citations Yang Li, Jonathan K. Pritchard et al. profile →
Variable prediction accuracy of polygenic scores within an ancestry group

2020 225 citations Hakhamanesh Mostafavi, Arbel Harpak et al. eLife profile →
Systematic differences in discovery of genetic effects on gene expression and complex traits

2023 108 citations Hakhamanesh Mostafavi, Jonathan K. Pritchard et al. profile →

Peers

Countries citing papers authored by Jonathan K. Pritchard

Since Specialization

Citations

This map shows the geographic impact of Jonathan K. Pritchard's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jonathan K. Pritchard with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jonathan K. Pritchard more than expected).

Fields of papers citing papers by Jonathan K. Pritchard

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jonathan K. Pritchard. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jonathan K. Pritchard. The network helps show where Jonathan K. Pritchard may publish in the future.

Co-authorship network of co-authors of Jonathan K. Pritchard

This figure shows the co-authorship network connecting the top 25 collaborators of Jonathan K. Pritchard. A scholar is included among the top collaborators of Jonathan K. Pritchard based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jonathan K. Pritchard. Jonathan K. Pritchard is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	RNA editing underlies genetic risk of common inflammatory diseases 2022 ·Nature ·Qin Li,Michael J. Gloudemans,Jonathan M. Geisinger,(unknown),François Aguet,Tao Sun,Gokul Ramaswami,Yang Li,Jinbiao Ma,Jonathan K. Pritchard,Stephen B. Montgomery,Jin Billy Li	95
2	Chromatin accessibility dynamics in a model of human forebrain development 2020 ·Science ·Alexandro E. Trevino,Nasa Sinnott-Armstrong,Jimena Andersen,Se‐Jin Yoon,Nina Huber,Jonathan K. Pritchard,Howard Y. Chang,William J. Greenleaf,Sergiu P. Pașca	149
3	Variable prediction accuracy of polygenic scores within an ancestry groupbreakdown → 2020 ·eLife ·Hakhamanesh Mostafavi,Arbel Harpak,Ipsita Agarwal,Dalton Conley,Jonathan K. Pritchard,Molly Przeworski	225
4	Reduced signal for polygenic adaptation of height in UK Biobank 2019 ·eLife ·Jeremy J. Berg,Arbel Harpak,Nasa Sinnott-Armstrong,(unknown),Hakhamanesh Mostafavi,Yair Field,Evan A. Boyle,Xinjun Zhang,Fernando Racimo,Jonathan K. Pritchard,Graham Coop	209
5	Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes 2018 ·eLife ·David A. Knowles,Courtney K. Burrows,John Blischak,(unknown),Daniel Serie,Nadine Norton,Carole Ober,Jonathan K. Pritchard,Yoav Gilad	71
6	Frequent nonallelic gene conversion on the human lineage and its effect on the divergence of gene duplicates 2017 ·Proceedings of the National Academy of Sciences ·Arbel Harpak,Xun Lan,Ziyue Gao,Jonathan K. Pritchard	29
7	Quantification of transplant-derived circulating cell-free DNA in absence of a donor genotype 2017 ·PLoS Computational Biology ·Eilon Sharon,Hao Shi,Sandhya Kharbanda,Winston Koh,Lance Martin,Kiran K. Khush,Hannah A. Valantine,Jonathan K. Pritchard,Iwijn De Vlaminck	65
8	Detection of human adaptation during the past 2000 years 2016 ·Science ·Yair Field,Evan A. Boyle,Natalie Telis,Ziyue Gao,Kyle J. Gaulton,David E. Golan,Loïc Yengo,Ghislain Rocheleau,Philippe Froguel,Mark I. McCarthy,Jonathan K. Pritchard	233
9	Whole Genome Sequencing Identifies a Novel Factor Required for Secretory Granule Maturation in Tetrahymena thermophila 2016 ·G3 Genes Genomes Genetics ·(unknown),Santosh Kumar,Xun Lan,Jonathan K. Pritchard,Aaron P. Turkewitz	9
10	Coregulation of tandem duplicate genes slows evolution of subfunctionalization in mammals 2016 ·Science ·Xun Lan,Jonathan K. Pritchard	123
11	RNA splicing is a primary link between genetic variation and diseasebreakdown → 2016 ·Science ·Yang Li,Bryce van de Geijn,Anil Raj,David A. Knowles,Allegra A. Petti,David E. Golan,Yoav Gilad,Jonathan K. Pritchard	382
12	Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling 2016 ·eLife ·Anil Raj,Sidney H. Wang,Heejung Shim,Arbel Harpak,Yang Li,Brett W. Engelmann,Matthew Stephens,Yoav Gilad,Jonathan K. Pritchard	109
13	Mutation Rate Variation is a Primary Determinant of the Distribution of Allele Frequencies in Humans 2016 ·PLoS Genetics ·Arbel Harpak,Anand Bhaskar,Jonathan K. Pritchard	42
14	fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Setsbreakdown → 2014 ·Genetics ·Anil Raj,Matthew Stephens,Jonathan K. Pritchard	1149
15	Epigenetic modifications are associated with inter-species gene expression variation in primates 2014 ·Genome biology ·Xiang Zhou,Carolyn E Cain,Marsha Myrthil,Noah Lewellen,Katelyn Michelini,Emily Davenport,Matthew Stephens,Jonathan K. Pritchard,Yoav Gilad	53
16	Comparative RNA sequencing reveals substantial genetic variation in endangered primates 2011 ·Genome Research ·George H. Perry,Páll Melsted,John C. Marioni,Ying Wang,Russell Bainer,Joseph K. Pickrell,Katelyn Michelini,Sarah Zehr,Anne D. Yoder,Matthew Stephens,Jonathan K. Pritchard,Yoav Gilad	102
17	Human adaptations to diet, subsistence, and ecoregion are due to subtle shifts in allele frequency 2010 ·Proceedings of the National Academy of Sciences ·Angela M. Hancock,David Witonsky,Edvard Ehler,Gorka Alkorta‐Aranburu,Cynthia M. Beall,Amha Gebremedhin,R. I. Sukernik,Gerd Utermann,Jonathan K. Pritchard,Graham Coop,Anna Di Rienzo	192
18	Sequencing and Analysis of Neanderthal Genomic DNAbreakdown → 2006 ·Science ·James P. Noonan,Graham Coop,Sridhar Kudaravalli,Doug Smith,Johannes Krause,(unknown),Feng Chen,Darren Platt,Svante Pääbo,Jonathan K. Pritchard,Edward M. Rubin	359
19	Coalescent-Based Association Mapping and Fine Mapping of Complex Trait Loci 2004 ·Genetics ·Sebastian Zöllner,Jonathan K. Pritchard	94
20	Traces of Human Migrations in Helicobacter pylori Populationsbreakdown → 2003 ·Science ·Daniel Falush,Thierry Wirth,Bodo Linz,Jonathan K. Pritchard,Matthew Stephens,Mark Kidd,Martin J. Blaser,David Y. Graham,(unknown),(unknown),Yoshio Yamaoka,Françis Mégraud,Kristina Otto,(unknown),Elena Katzowitsch,Xiaoyan Wang,Mark Achtman,Sebastian Suerbaum	742

About Jonathan K. Pritchard

Jonathan K. Pritchard is a scholar working on Genetics, Molecular Biology and Cancer Research, having authored 182 papers that have together received 77.5k indexed citations. Recurring topics across this work include Genetic Associations and Epidemiology (56 papers), Genetic Mapping and Diversity in Plants and Animals (35 papers) and Genomics and Chromatin Dynamics (30 papers). The work is most often cited by research in Genetics (47.6k citations), Nature and Landscape Conservation (6.6k citations) and Ecological Modeling (2.2k citations). Jonathan K. Pritchard has collaborated with scholars based in United States, United Kingdom and Germany. Frequent co-authors include Matthew Stephens, Peter Donnelly, Daniel Falush, Joseph K. Pickrell, Noah A. Rosenberg, Yoav Gilad, Yang Li, Sridhar Kudaravalli, Xiaoquan Wen and Benjamin F. Voight. Their work appears in journals such as Nature, Science and Cell.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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