Jonathan B. Clayton

5.3k citations

36 papers · 1.5k indexed · 1 hit paper · h-index 15

Co-authors: Dan Knights Timothy J. Johnson Pajau Vangay John Garbe Trevor J. Gould Daryl M. Gohl Aaron Becker Kenneth B. Beckman
Topics: Gut microbiota and health (25 papers)Clostridium difficile and Clostridium perfringens research (10 papers)Diet and metabolism studies (8 papers)
Cited by: Biological Psychiatry Molecular Biology Infectious Diseases
Journals: Proceedings of the National Academy of SciencesSHILAP Revista de lepidopterologíaNature Biotechnology
Partner nations: United States Vietnam United Kingdom

In The Last Decade

Jonathan B. Clayton

35 papers receiving 1.5k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

2016 559 citations Daryl M. Gohl, Pajau Vangay et al. Nature Biotechnology profile →

Peers

Countries citing papers authored by Jonathan B. Clayton

Since Specialization

Citations

This map shows the geographic impact of Jonathan B. Clayton's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jonathan B. Clayton with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jonathan B. Clayton more than expected).

Fields of papers citing papers by Jonathan B. Clayton

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jonathan B. Clayton. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jonathan B. Clayton. The network helps show where Jonathan B. Clayton may publish in the future.

Co-authorship network of co-authors of Jonathan B. Clayton

This figure shows the co-authorship network connecting the top 25 collaborators of Jonathan B. Clayton. A scholar is included among the top collaborators of Jonathan B. Clayton based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jonathan B. Clayton. Jonathan B. Clayton is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Microbiome and metabolome association network analysis identifies Clostridium_sensu_stricto_1 as a stronger keystone genus candidate than Bifidobacterium in the gut of common marmosets 2025 ·mSystems ·(unknown),Shivdeep S. Hayer,Sophie Alvarez,(unknown),(unknown),(unknown),(unknown),Andrew K. Benson,Mallory J. Van Haute,Jacques Izard,Hyun‐Seob Song,Jonathan B. Clayton	0
2	Cardiometabolic disease risk in gorillas is associated with altered gut microbial metabolism 2025 ·npj Biofilms and Microbiomes ·(unknown),(unknown),Zoë Ward,(unknown),(unknown),(unknown),Dominic A. Travis,Jonathan B. Clayton,(unknown),(unknown),(unknown),Ran Blekhman,(unknown),(unknown),Jaroslav Havlík,Klára J. Petrželková,Andrés Gómez	1
3	Hematology and blood biochemistry in a declining population of mantled howler monkeys (Alouatta palliata palliata) at La Pacifica, Costa Rica 2023 ·Journal of Medical Primatology ·(unknown),(unknown),(unknown),(unknown),(unknown),(unknown),Jonathan B. Clayton,Robin Shields‐Cutler,Kari Brossard Stoos	1
4	Antibiotic-induced gut dysbiosis and cognitive, emotional, and behavioral changes in rodents: a systematic review and meta-analysis 2023 ·Frontiers in Neuroscience ·Shivdeep S. Hayer,Soonjo Hwang,Jonathan B. Clayton	25
5	Design, Biological Evaluation, and Computer-Aided Analysis of Dihydrothiazepines as Selective Antichlamydial Agents 2023 ·Journal of Medicinal Chemistry ·(unknown),(unknown),(unknown),Kelly Mari Pires de Oliveira,(unknown),Shivdeep S. Hayer,Jonathan B. Clayton,(unknown),Derek J. Fisher,Scot P. Ouellette,Martin Conda‐Sheridan	5
6	Gut Site and Gut Morphology Predict Microbiome Structure and Function in Ecologically Diverse Lemurs 2022 ·Microbial Ecology ·Lydia K. Greene,Erin A. McKenney,(unknown),(unknown),Shivdeep S. Hayer,Erin E. Ehmke,Jonathan B. Clayton	4
7	The primate gut mycobiome-bacteriome interface is impacted by environmental and subsistence factors 2022 ·npj Biofilms and Microbiomes ·Ashok Sharma,(unknown),Barbora Pafčo,Jonathan B. Clayton,Jessica M. Rothman,Matthew R. McLennan,Marie Cibot,(unknown),Roman Vodička,(unknown),Klára J. Petrželková,Andrés Gómez	16
8	Interspecies variation in hominid gut microbiota controls host gene regulation 2021 ·Cell Reports ·Amanda L. Muehlbauer,Allison L. Richards,Adnan Alazizi,Michael B. Burns,Andrés Gómez,Jonathan B. Clayton,Klára J. Petrželková,(unknown),(unknown),Xiaoquan Wen,Roger Piqué-Regi,Francesca Luca,Ran Blekhman	10
9	Host Identity and Geographic Location Significantly Affect Gastrointestinal Microbial Richness and Diversity in Western Lowland Gorillas (Gorilla gorilla gorilla) under Human Care 2021 ·Animals ·(unknown),Jonathan B. Clayton,Anneke Moresco,Erin A. McKenney,Larry J. Minter,Mallory J. Van Haute,(unknown),Shivdeep S. Hayer,Lifeng Zhu,(unknown),Kimberly Ange‐van Heugten	3
10	Wild primate microbiomes prevent weight gain in germ-free mice 2020 ·SHILAP Revista de lepidopterología ·Dimitrios N. Sidiropoulos,Gabriel A. Al‐Ghalith,Robin Shields‐Cutler,Tonya Ward,Abigail J. Johnson,Pajau Vangay,Dan Knights,Purna Kashyap,Yibo Xian,Amanda E. Ramer‐Tait,Jonathan B. Clayton	10
11	Bacterial community structure and function distinguish gut sites in captive red‐shanked doucs (Pygathrix nemaeus) 2019 ·American Journal of Primatology ·Jonathan B. Clayton,Robin Shields‐Cutler,(unknown),Gabriel A. Al‐Ghalith,John Chih Mun Sha,Timothy J. Johnson,Dan Knights	10
12	Antibiotics and Host-Tailored Probiotics Similarly Modulate Effects on the Developing Avian Microbiome, Mycobiome, and Host Gene Expression 2019 ·mBio ·Tonya Ward,(unknown),(unknown),Jessica L. Danzeisen,(unknown),Kevin S. Lang,Jonathan B. Clayton,(unknown),(unknown),(unknown),(unknown),Timothy Heisel,Dan Knights,Carol J. Cardona,Michael H. Kogut,(unknown),Sally Noll,Ryan J. Arsenault,Kent M. Reed,Timothy J. Johnson	29
13	Nutrient-based diet modifications impact on the gut microbiome of the Javan slow loris (Nycticebus javanicus) 2019 ·Scientific Reports ·Francis Cabana,Jonathan B. Clayton,K. A. I. Nekaris,(unknown),Dan Knights,Henning Seedorf	25
14	Local habitat, not phylogenetic relatedness, predicts gut microbiota better within folivorous than frugivorous lemur lineages 2019 ·Biology Letters ·Lydia K. Greene,Jonathan B. Clayton,Ryan S. Rothman,(unknown),(unknown),Thomas R. Gillespie,Patricia C. Wright,Christine M. Drea	29
15	Diverse bacterial communities exist on canine skin and are impacted by cohabitation and time 2017 ·PeerJ ·Sheila M. F. Torres,Jonathan B. Clayton,Jessica L. Danzeisen,Tonya Ward,Hu Huang,Dan Knights,Timothy J. Johnson	33
16	Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studiesbreakdown → 2016 ·Nature Biotechnology ·Daryl M. Gohl,Pajau Vangay,John Garbe,(unknown),(unknown),Aaron Becker,Trevor J. Gould,Jonathan B. Clayton,Timothy J. Johnson,Ryan C. Hunter,Dan Knights,Kenneth B. Beckman	559
17	Temporal Relationships Exist Between Cecum, Ileum, and Litter Bacterial Microbiomes in a Commercial Turkey Flock, and Subtherapeutic Penicillin Treatment Impacts Ileum Bacterial Community Establishment 2015 ·Frontiers in Veterinary Science ·Jessica L. Danzeisen,Jonathan B. Clayton,Hu Huang,Dan Knights,Brian McComb,Shivdeep S. Hayer,Timothy J. Johnson	45
18	Longitudinal Characterization of Escherichia coli in Healthy Captive Non-Human Primates 2014 ·Frontiers in Veterinary Science ·Jonathan B. Clayton,Jessica L. Danzeisen,Ava M. Trent,(unknown),Timothy J. Johnson	13
19	Dietary choices by four captive slender lorises (Loris tardigradus) when presented with various insect life stages 2010 ·Zoo Biology ·Jonathan B. Clayton,Kenneth E. Glander	2
20	The application of robotics and mass spectrometry to the characterisation of theDrosophila melanogaster indirect flight muscle proteome 1997 ·International Journal of Peptide Research and Therapeutics ·Keith Ashman,Tony Houthaeve,Jonathan B. Clayton,Matthias Wilm,Alexandre V. Podtelejnikov,Ole N. Jensen,Matthias Mann	8

About Jonathan B. Clayton

Jonathan B. Clayton is a scholar working on Biological Psychiatry, Behavioral Neuroscience and Infectious Diseases, having authored 36 papers that have together received 1.5k indexed citations. Recurring topics across this work include Gut microbiota and health (25 papers), Clostridium difficile and Clostridium perfringens research (10 papers) and Diet and metabolism studies (8 papers). The work is most often cited by research in Biological Psychiatry (55 citations), Molecular Biology (1.1k citations) and Infectious Diseases (272 citations). Jonathan B. Clayton has collaborated with scholars based in United States, Vietnam and United Kingdom. Frequent co-authors include Dan Knights, Timothy J. Johnson, Pajau Vangay, John Garbe, Trevor J. Gould, Daryl M. Gohl, Aaron Becker, Kenneth B. Beckman, Ryan C. Hunter and Gabriel A. Al‐Ghalith. Their work appears in journals such as Proceedings of the National Academy of Sciences, SHILAP Revista de lepidopterología and Nature Biotechnology.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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