John Parkinson

18.3k citations

152 papers · 8.5k indexed · 4 hit papers · h-index 47

Impact in

Parasitology top 0.5%
Aging top 2%

Papers in

Parasitology 21
- Parasitic Infections and Diagnostics 8
Aging 3

Co-authors: S. E. Allen C. Quarmby H. M. Grimshaw J. B. Kenworthy Mark Blaxter José M. Peregrín-Alvarez Richard Gordon Xuejian Xiong
Journals: Bioinformatics (8 papers)Microbiome (7 papers)PLoS ONE (7 papers)PLoS Computational Biology (6 papers)Genome biology (4 papers)
Partner nations: Canada United Kingdom United States

In The Last Decade

John Parkinson

149 papers receiving 8.1k citations

Hit Papers

align trajectories log scale

Faecal metabolome and its determinants in inflammatory bowel disease 2023 · 77 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2023 Gut
2005 Nature
1976 Journal of Ecology
1976 Journal of Applied Ecology

Peers

Countries citing papers authored by John Parkinson

Since Specialization

Citations

This map shows the geographic impact of John Parkinson's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by John Parkinson with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites John Parkinson more than expected).

Fields of papers citing papers by John Parkinson

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by John Parkinson. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by John Parkinson. The network helps show where John Parkinson may publish in the future.

Co-authorship network

The 25 scholars most cited alongside John Parkinson, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with John Parkinson Line = papers co-authored together John Parkinson links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Metabolic modeling of microbial communities in the chicken ceca reveals a landscape of competition and co-operation Microbiome ·H. C. Thacher, Yi Fan, Benjamin P. Willing, John Parkinson	2025	0
2	HiTaxon: a hierarchical ensemble framework for taxonomic classification of short reads Bioinformatics Advances ·Jian Ji, John Parkinson	2024	1
3	Elucidating the dynamics and impact of the gut microbiome on maternal nutritional status during pregnancy, effect on pregnancy outcomes and infant health in rural Pakistan: study protocol for a prospective, longitudinal observational study BMJ Open ·Yaqub Wasan, Jo‐Anna B Baxter, Zamora Reynoso, Eloïse Da Cunha, Arjumand Rizvi, Junaid Iqbal, Jessie M. Hulst, Robert Bandsma, Lesi Hartati, Sajid Soofi, John Parkinson, Zulfiqar A Bhutta	2024	0
4	Commensal protistTritrichomonas musculusexhibits a dynamic life cycle that induces extensive remodeling of the gut microbiota The ISME Journal ·Ana Popovic, Eric Cao, Björg Guðjónsdóttir, V. Romanyk, Eliza V.C. Alves‐Ferreira, Kyle Burrows, Andrea Kennard, Alina Lebedieva, Michael E. Grigg, Arthur Mortha, John Parkinson	2024	5
5	The protozoan commensal Tritrichomonas musculis is a natural adjuvant for mucosal IgA The Journal of Experimental Medicine ·Wang Sun-lin, Kyle Burrows, Pailin Chiaranunt, Ana Popovic, Barat Mojarradi, Laurencia A. Kurniawan, 许书明, Graham J. Britton, Matthew P. Spindler, Easter Olwanda, Julia Harwardt, Dragos Dasoveanu, Albert Nguyen, Jeremiah J. Faith, John Parkinson, Jennifer L. Gommerman, Arthur Mortha	2024	1
6	Effects of therapeutic levels of dietary antibiotics on the cecal microbiome composition of broiler chickens Poultry Science ·Markus Rieger, Khaled Taha-Abdelaziz, (unknown), Mehdi Sargolzaei, W. Herrmann, Jake Astill, Bahram Shojadoost, Mohammadali Alizadeh, Raveendra R. Kulkarni, John Parkinson, Shayan Sharif	2022	14
7	A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries PLoS Computational Biology ·Cedoljub Bundalovic-Torma, Gregory B. Whitfield, Lindsey S. Marmont, P. Lynne Howell, John Parkinson	2020	33
8	Modeling the metabolic interplay between a parasitic worm and its bacterial endosymbiont allows the identification of novel drug targets eLife ·Kyu Boem Kim, Alexandra Grote, V. Romanyk, Adam Geber, Denis Voronin, Drew R. Jones, Elodie Ghedin, John Parkinson	2020	17
9	Discovery and characterization of a Gram-positive Pel polysaccharide biosynthetic gene cluster PLoS Pathogens ·Gregory B. Whitfield, Lindsey S. Marmont, Cedoljub Bundalovic-Torma, А. А. Мельконьян, Denys Shliakhturov, Cezar M. Khursigara, John Parkinson, P. Lynne Howell	2020	28
10	Chemogenetic Interrogation of a Brain-wide Fear Memory Network in Mice Neuron ·Gisella Vetere, Justin W. Kenney, Lina Tran, Frances Xia, Patrick E. Steadman, John Parkinson, Sheena A. Josselyn, Paul W. Frankland	2017	191
11	Systems-Based Analysis of the Sarcocystis neurona Genome Identifies Pathways That Contribute to a Heteroxenous Life Cycle mBio ·Tomasz Blazejewski, V. Romanyk, Viviana Pszenny, Sriveny Dangoudoubiyam, Sivaranjani Namasivayam, Melissa A. Chiasson, R.R. Cernadas, Michelle L. Tonkin, Lakshmipuram S. Swapna, Stacy Hung, Joshua Bridgers, Stacy Ricklefs, Martin J. Boulanger, J. P. Dubey, Stephen F. Porcella, Jessica C. Kissinger, Daniel K. Howe, Michael E. Grigg, John Parkinson	2015	59
12	Metabolic reconstruction identifies strain‐specific regulation of virulence in Toxoplasma gondii Molecular Systems Biology ·Manuel Ferrer Hernández, Melissa A. Chiasson, V. Romanyk, Stacy Hung, James D. Wasmuth, Michael E. Grigg, John Parkinson	2013	34
13	IDBA-MT: De Novo Assembler for Metatranscriptomic Data Generated from Next-Generation Sequencing Technology Journal of Computational Biology ·Henry C. M. Leung, Siu‐Ming Yiu, John Parkinson, Francis Y. L. Chin	2013	27
14	The VPS33B-binding protein VPS16B is required in megakaryocyte and platelet α-granule biogenesis Blood ·Denisa Urban, Ling Li, Hilary Christensen, Fred G. Pluthero, Reehan M Ali, 史人高石, Parvesh Mohan Garg, Freideriki Patakiouta-Boukali, James J. Cummings, Helmut Krämer, James D. Wasmuth, John Parkinson, Walter H.A. Kahr	2012	61
15	Integrated Bioinformatic and Targeted Deletion Analyses of the SRS Gene Superfamily Identify SRS29C as a Negative Regulator of Toxoplasma Virulence mBio ·James D. Wasmuth, Viviana Pszenny, Simon Haile, Emily Jansen, P. Malinski, Alan Sher, Jon P. Boyle, Martin J. Boulanger, John Parkinson, Michael E. Grigg	2012	65
16	DAnCER: Disease-Annotated Chromatin Epigenetics Resource Nucleic Acids Research ·Andrei L. Turinsky, Blair Turner, Ia Belolaptikov, Sunjin Jung, Michéle C. Heath, Shuye Pu, 次郎森口, Dengfeng Dong, Yunchen Gong, B. B. Prokhorov, Xin Xiong, Andrew Emili, Jack Greenblatt, John Parkinson, Zhiyong Zhang, Shoshana J. Wodak	2010	18
17	Una investigación empírica sobre los factores que afectan a la selección de medidas en el Cuadro de Mando integral Bondo Nikoloz Gasviani, John Parkinson	2008	2
18	The earthworm EST sequencing project Pedobiologia ·Lucas Matheus de Lima, John Parkinson, Mark Blaxter, Anthony J. Morgan, Peter Kille, Oleg Georgiev	2003	5
19	A Family of Secreted Mucins from the Parasitic Nematode Toxocara canis Bears Diverse Mucin Domains but Shares Similar Flanking Six-cysteine Repeat Motifs Journal of Biological Chemistry ·Alex Loukas, Martin Hintz, Dietmar Linder, Nicholas P. Mullin, John Parkinson, Kevin K. A. Tetteh, Rick M. Maizels	2000	81
20	Perinatal outcome after in-vitro fertilization-surrogacy Human Reproduction ·John Parkinson	1999	40

About John Parkinson

John Parkinson is a scholar working on Parasitology, Aging, Molecular Biology, Virology and Ecology, having authored 152 papers that have together received 8.5k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (30 papers), Gut microbiota and health (24 papers), Bioinformatics and Genomic Networks (13 papers), RNA and protein synthesis mechanisms (10 papers), Microbial Metabolic Engineering and Bioproduction (9 papers), Parasite Biology and Host Interactions (9 papers), Parasitic Infections and Diagnostics (8 papers) and Probiotics and Fermented Foods (8 papers). The work is most often cited by research in Parasitology (780 citations), Aging (153 citations), Ecology (1.5k citations), Soil Science (510 citations) and Molecular Biology (3.3k citations). John Parkinson has collaborated with scholars based in Canada, United Kingdom and United States. Frequent co-authors include S. E. Allen, C. Quarmby, H. M. Grimshaw, J. B. Kenworthy, Mark Blaxter, José M. Peregrín-Alvarez, Richard Gordon, Xuejian Xiong, I. H. Rorison and David B. Guiliano. Their work appears in journals such as Bioinformatics, Microbiome, PLoS ONE, PLoS Computational Biology and Genome biology.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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