Jérôme Baudry

5.4k total citations · 2 hit papers
82 papers, 4.0k citations indexed

About

Jérôme Baudry is a scholar working on Molecular Biology, Computational Theory and Mathematics and Spectroscopy. According to data from OpenAlex, Jérôme Baudry has authored 82 papers receiving a total of 4.0k indexed citations (citations by other indexed papers that have themselves been cited), including 60 papers in Molecular Biology, 22 papers in Computational Theory and Mathematics and 14 papers in Spectroscopy. Recurrent topics in Jérôme Baudry's work include Protein Structure and Dynamics (30 papers), Computational Drug Discovery Methods (22 papers) and Enzyme Structure and Function (11 papers). Jérôme Baudry is often cited by papers focused on Protein Structure and Dynamics (30 papers), Computational Drug Discovery Methods (22 papers) and Enzyme Structure and Function (11 papers). Jérôme Baudry collaborates with scholars based in United States, Germany and Australia. Jérôme Baudry's co-authors include Jeremy C. Smith, Nancy R. Sottos, Scott R. White, Scott R. Wilson, Jeffrey S. Moore, Charles R. Hickenboth, Klaus Schulten, Yinglong Miao, May R. Berenbaum and Mary A. Schuler and has published in prestigious journals such as Nature, Proceedings of the National Academy of Sciences and Journal of the American Chemical Society.

In The Last Decade

Jérôme Baudry

81 papers receiving 3.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Biasing reaction pathways with mechanical force

2007 693 citations Charles R. Hickenboth, Jeffrey S. Moore et al. Nature profile →
Ensemble Docking in Drug Discovery

2018 313 citations Rommie E. Amaro, Jérôme Baudry et al. Biophysical Journal profile →

Peers

Countries citing papers authored by Jérôme Baudry

Since Specialization

Citations

This map shows the geographic impact of Jérôme Baudry's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jérôme Baudry with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jérôme Baudry more than expected).

Fields of papers citing papers by Jérôme Baudry

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jérôme Baudry. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jérôme Baudry. The network helps show where Jérôme Baudry may publish in the future.

Co-authorship network of co-authors of Jérôme Baudry

This figure shows the co-authorship network connecting the top 25 collaborators of Jérôme Baudry. A scholar is included among the top collaborators of Jérôme Baudry based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jérôme Baudry. Jérôme Baudry is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Linking machine learning and biophysical structural features in drug discovery 2025 ·Frontiers in Molecular Biosciences ·Armin Ahmadi, (unknown), Vineetha Menon, Jérôme Baudry	0
2	Origins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation 2022 ·Nature Communications ·Barbara A. Bensing, (unknown), Rupesh Agarwal, (unknown), (unknown), Kemal Solakyildirim, Hai Yu, (unknown), Manuel Castro, (unknown), (unknown), Z. Wawrzak, Xi Chen, Carlito B. Lebrilla, Jérôme Baudry, Jeremy C. Smith, Paul M. Sullam, T.M. Iverson	9
3	The carboxylation status of osteocalcin has important consequences for its structure and dynamics 2020 ·Biochimica et Biophysica Acta (BBA) - General Subjects ·Karan Kapoor, Min Pi, (unknown), L. Darryl Quarles, Jérôme Baudry, Jeremy C. Smith	12
4	Ensemble Docking in Drug Discovery breakdown → 2018 ·Biophysical Journal ·Rommie E. Amaro, Jérôme Baudry, John D. Chodera, Özlem Demir, J. Andrew McCammon, Yinglong Miao, Jeremy C. Smith	313
5	Thermophilic Enzyme or Mesophilic Enzyme with Enhanced Thermostability: Can We Draw a Line? 2017 ·The Journal of Physical Chemistry B ·(unknown), (unknown), Jérôme Baudry, Engin H. Serpersu	3
6	Ensemble-based docking: From hit discovery to metabolism and toxicity predictions 2016 ·Bioorganic & Medicinal Chemistry ·(unknown), (unknown), Sally R. Ellingson, (unknown), Karan Kapoor, Jeremy C. Smith, Jérôme Baudry	35
7	Structure-based design of broadly protective group a streptococcal M protein-based vaccines 2016 ·Vaccine ·James B. Dale, Pierre R. Smeesters, Harry S. Courtney, Thomas A. Penfound, Claudia Hohn, Jeremy C. Smith, Jérôme Baudry	32
8	Discovery of an Inhibitor of Z-Alpha1 Antitrypsin Polymerization 2015 ·PLoS ONE ·Valérie Berthelier, (unknown), (unknown), Jérôme Baudry	7
9	A phenylalanine rotameric switch for signal-state control in bacterial chemoreceptors 2013 ·Nature Communications ·Davi R. Ortega, Chen Yang, Peter Ames, Jérôme Baudry, John S. Parkinson, Igor B. Zhulin	38
10	Homology Modeling of the CheW Coupling Protein of the Chemotaxis Signaling Complex 2013 ·PLoS ONE ·Derek J. Cashman, Davi R. Ortega, Igor B. Zhulin, Jérôme Baudry	4
11	Active-Site Hydration and Water Diffusion in Cytochrome P450cam: A Highly Dynamic Process 2011 ·Biophysical Journal ·Yinglong Miao, Jérôme Baudry	20
12	Task‐parallel message passing interface implementation of Autodock4 for docking of very large databases of compounds using high‐performance super‐computers 2010 ·Journal of Computational Chemistry ·(unknown), Roland Schulz, Jeremy C. Smith, Jérôme Baudry	41
13	Biasing reaction pathways with mechanical force breakdown → 2007 ·Nature ·Charles R. Hickenboth, Jeffrey S. Moore, Scott R. White, Nancy R. Sottos, Jérôme Baudry, Scott R. Wilson	693
14	A retinoic acid binding cytochrome P450: CYP120A1 from Synechocystis sp. PCC 6803 2005 ·Archives of Biochemistry and Biophysics ·Na Ke, Jérôme Baudry, Thomas M. Makris, Mary A. Schuler, Stephen G. Sligar	23
15	Classical force field parameters for the heme prosthetic group of cytochrome c 2004 ·Journal of Computational Chemistry ·(unknown), Emad Tajkhorshid, Jérôme Baudry, Zaida Luthey‐Schulten	178
16	Aβ, aging, and Alzheimer's disease: A tale, models, and hypotheses 2003 ·Neurological Research ·Michael O. Chaney, Jérôme Baudry, Chera L. Esh, Jennifer Childress, Dean C. Luehrs, Tyler A. Kokjohn, Alex E. Roher	20
17	Common active site architecture and binding strategy of four phenylpropanoid P450s from Arabidopsis thaliana as revealed by molecular modeling 2003 ·Protein Engineering Design and Selection ·(unknown), Jérôme Baudry, Mary A. Schuler	48
18	Steered molecular dynamics investigations of protein function 2001 ·Journal of Molecular Graphics and Modelling ·Barry Isralewitz, Jérôme Baudry, Justin Gullingsrud, Dorina Kosztin, Klaus Schulten	291
19	Oligomerization and fibril assembly of the amyloid-β protein 2000 ·Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease ·Alex E. Roher, Jérôme Baudry, Michael O. Chaney, Yu‐Min Kuo, W. Blaine Stine, Mark R. Emmerling	67
20	Molecular Dynamics Study of the Nature and Origin of Retinal's Twisted Structure in Bacteriorhodopsin 2000 ·Biophysical Journal ·Emad Tajkhorshid, Jérôme Baudry, Klaus Schulten, Sándor Suhai	95

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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