Jens Stoye

10.5k total citations
134 papers, 3.5k citations indexed

About

Jens Stoye is a scholar working on Molecular Biology, Genetics and Artificial Intelligence. According to data from OpenAlex, Jens Stoye has authored 134 papers receiving a total of 3.5k indexed citations (citations by other indexed papers that have themselves been cited), including 102 papers in Molecular Biology, 48 papers in Genetics and 46 papers in Artificial Intelligence. Recurrent topics in Jens Stoye's work include Genomics and Phylogenetic Studies (81 papers), Algorithms and Data Compression (45 papers) and Genome Rearrangement Algorithms (35 papers). Jens Stoye is often cited by papers focused on Genomics and Phylogenetic Studies (81 papers), Algorithms and Data Compression (45 papers) and Genome Rearrangement Algorithms (35 papers). Jens Stoye collaborates with scholars based in Germany, United States and Canada. Jens Stoye's co-authors include Alexander Goesmann, Folker Meyer, Dorothea Evers, Dan Gusfield, Peter Husemann, Wolfgang Gerlach, Lutz Krause, Alfred Pühler, Dag Harmsen and Naryttza N. Diaz and has published in prestigious journals such as Nucleic Acids Research, SHILAP Revista de lepidopterología and Blood.

In The Last Decade

Jens Stoye

126 papers receiving 3.3k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Jens Stoye Germany 32 2.6k 671 668 601 524 134 3.5k
Francis Y. L. Chin Hong Kong 26 2.4k 0.9× 528 0.8× 257 0.4× 413 0.7× 1.4k 2.7× 89 4.5k
Thomas Brettin United States 37 3.2k 1.2× 141 0.2× 897 1.3× 726 1.2× 1.5k 3.0× 97 6.5k
Victor Markowitz United States 31 4.9k 1.9× 348 0.5× 441 0.7× 1.2k 2.1× 2.9k 5.6× 127 7.3k
S. Cenk Şahinalp Canada 25 3.1k 1.2× 425 0.6× 1.1k 1.6× 661 1.1× 508 1.0× 58 4.6k
Darren A. Natale United States 20 4.3k 1.7× 136 0.2× 783 1.2× 1.1k 1.9× 1.0k 2.0× 41 5.8k
Mile Šikić Croatia 16 2.9k 1.1× 187 0.3× 766 1.1× 922 1.5× 693 1.3× 46 4.4k
Jared T. Simpson Canada 20 5.3k 2.1× 471 0.7× 1.1k 1.7× 1.7k 2.8× 1.4k 2.7× 32 7.3k
João Carlos Setúbal Brazil 40 2.1k 0.8× 225 0.3× 374 0.6× 2.3k 3.8× 990 1.9× 164 5.9k
Toshihisa Takagi Japan 30 3.3k 1.3× 626 0.9× 472 0.7× 296 0.5× 565 1.1× 128 4.5k
Konstantin Berlin United States 11 3.5k 1.3× 389 0.6× 694 1.0× 2.0k 3.3× 1.0k 1.9× 19 6.0k

Countries citing papers authored by Jens Stoye

Since Specialization
Citations

This map shows the geographic impact of Jens Stoye's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jens Stoye with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jens Stoye more than expected).

Fields of papers citing papers by Jens Stoye

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jens Stoye. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jens Stoye. The network helps show where Jens Stoye may publish in the future.

Co-authorship network of co-authors of Jens Stoye

This figure shows the co-authorship network connecting the top 25 collaborators of Jens Stoye. A scholar is included among the top collaborators of Jens Stoye based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jens Stoye. Jens Stoye is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Lima, Leandro, et al.. (2024). Applying rearrangement distances to enable plasmid epidemiology with pling. Microbial Genomics. 10(10). 14 indexed citations
2.
Garrison, Erik, et al.. (2024). Panacus: fast and exact pangenome growth and core size estimation. Bioinformatics. 40(12). 6 indexed citations
3.
Wittler, Roland, et al.. (2021). Detecting high-scoring local alignments in pangenome graphs. Bioinformatics. 37(16). 2266–2274. 6 indexed citations
4.
Doerr, Daniel, et al.. (2021). Computing the Rearrangement Distance of Natural Genomes. Journal of Computational Biology. 28(4). 410–431. 14 indexed citations
5.
Glöckner, Frank Oliver, Michael Diepenbroek, Janine Felden, et al.. (2020). NFDI4BioDiversity - A Consortium for the National Research Data Infrastructure (NFDI). Zenodo (CERN European Organization for Nuclear Research). 6 indexed citations
6.
Dantas, Simone, et al.. (2017). Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. DROPS (Schloss Dagstuhl – Leibniz Center for Informatics).
7.
Doerr, Daniel, Pedro Feijão, & Jens Stoye. (2017). Family-Free Genome Comparison. Methods in molecular biology. 1704. 331–342. 4 indexed citations
8.
Doerr, Daniel, Jens Stoye, Sebastian Böcker, & Katharina Jahn. (2014). Identifying gene clusters by discovering common intervals in indeterminate strings. BMC Genomics. 15(S6). S2–S2. 8 indexed citations
9.
Jakobi, Tobias, Karina Brinkrolf, Andreas Tauch, et al.. (2014). Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing. Journal of Biotechnology. 190. 64–75. 7 indexed citations
10.
Schwientek, Patrick, Christian Rückert, Andreas Klein, et al.. (2012). Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media. Journal of Biotechnology. 167(2). 166–177. 20 indexed citations
11.
Schwientek, Patrick, Rafael Szczepanowski, Christian Rückert, Jens Stoye, & Alfred Pühler. (2011). Sequencing of high G+C microbial genomes using the ultrafast pyrosequencing technology. Journal of Biotechnology. 155(1). 68–77. 29 indexed citations
12.
Erdős, Péter L., Lajos Soukup, & Jens Stoye. (2010). Balanced vertices in trees and a simpler algorithm to compute the genomic distance. Applied Mathematics Letters. 24(1). 82–86. 2 indexed citations
13.
Stoye, Jens & Roland Wittler. (2009). A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 6(3). 387–400. 19 indexed citations
14.
Stoye, Jens, et al.. (2003). Evaluation of the Jumping Alignment Algorithm with Artificial and Biological Data. PUB – Publications at Bielefeld University (Bielefeld University). 21–25.
15.
Stoye, Jens. (2002). Index Structures for Large Sequence Data: Suffix Trees and Affix Trees. PUB – Publications at Bielefeld University (Bielefeld University). 67–71.
16.
Rehmsmeier, Marc, et al.. (2001). Sequence Database Search Using Jumping Alignments.. 142. 3 indexed citations
17.
Reinert, Knut, et al.. (1999). Combining Divide-and-Conquer, the A * -Algorithm, and Successive Realignment Approaches to Speed Multiple Sequence Alignment.. 17–24. 4 indexed citations
18.
Stoye, Jens & Dan Gusfield. (1998). Simple and flexible detection of contiguous repeats using a suffix tree. PUB – Publications at Bielefeld University (Bielefeld University). 1 indexed citations
19.
Stoye, Jens, et al.. (1997). Improving the divide-and-conquer approach to sum-of-pairs multiple sequence alignment. Applied Mathematics Letters. 10(2). 67–73. 16 indexed citations
20.
Stoye, Jens, et al.. (1996). Fast Approximation to the NP-hard Problem of Multiple Sequence Alignment. PUB – Publications at Bielefeld University (Bielefeld University). 33(6). 591–6. 1 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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