Isaac Virshup

3.8k total citations · 1 hit paper
8 papers, 911 citations indexed

About

Isaac Virshup is a scholar working on Molecular Biology, Cellular and Molecular Neuroscience and Pulmonary and Respiratory Medicine. According to data from OpenAlex, Isaac Virshup has authored 8 papers receiving a total of 911 indexed citations (citations by other indexed papers that have themselves been cited), including 4 papers in Molecular Biology, 1 paper in Cellular and Molecular Neuroscience and 1 paper in Pulmonary and Respiratory Medicine. Recurrent topics in Isaac Virshup's work include Single-cell and spatial transcriptomics (3 papers), RNA modifications and cancer (1 paper) and Advanced Biosensing Techniques and Applications (1 paper). Isaac Virshup is often cited by papers focused on Single-cell and spatial transcriptomics (3 papers), RNA modifications and cancer (1 paper) and Advanced Biosensing Techniques and Applications (1 paper). Isaac Virshup collaborates with scholars based in Australia, United States and United Kingdom. Isaac Virshup's co-authors include Fabian J. Theis, Sergei Rybakov, Louis B. Kuemmerle, Ignacio L. Ibarra, Anna C. Schaar, Mohammad Lotfollahi, Olle Holmberg, Michal Klein, Sabrina Richter and Hannah Spitzer and has published in prestigious journals such as Nature Neuroscience, Nature Methods and Oncogene.

In The Last Decade

Isaac Virshup

8 papers receiving 899 citations

Hit Papers

align trajectories sort by overperformance

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Squidpy: a scalable framework for spatial omics analysis

2022 417 citations Giovanni Palla, Hannah Spitzer et al. Nature Methods profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Isaac Virshup Australia	6	678	185	168	94	84	8	911
Michael Zager United States	6	781 1.2×	159 0.9×	99 0.6×	84 0.9×	153 1.8×	12	1.0k
Arwa S. Kathiria United States	13	901 1.3×	112 0.6×	205 1.2×	62 0.7×	247 2.9×	14	1.2k
Shila Ghazanfar Australia	17	770 1.1×	309 1.7×	179 1.1×	155 1.6×	148 1.8×	36	1.1k
Charlotte Labalette France	14	1.1k 1.6×	146 0.8×	206 1.2×	56 0.6×	196 2.3×	15	1.3k
Voichita D. Marinescu Sweden	14	720 1.1×	109 0.6×	94 0.6×	39 0.4×	174 2.1×	24	955
Ian H. Guldner United States	13	277 0.4×	196 1.1×	161 1.0×	43 0.5×	83 1.0×	22	643
Darren Locke United States	20	726 1.1×	180 1.0×	120 0.7×	42 0.4×	54 0.6×	35	1.2k
Andrew P. Voigt United States	17	697 1.0×	148 0.8×	235 1.4×	19 0.2×	84 1.0×	41	1.2k
Alison Brack United States	4	903 1.3×	116 0.6×	143 0.9×	127 1.4×	297 3.5×	7	1.1k
Gennaro Gambardella Italy	13	432 0.6×	134 0.7×	80 0.5×	28 0.3×	163 1.9×	25	651

Countries citing papers authored by Isaac Virshup

Since Specialization

Citations

This map shows the geographic impact of Isaac Virshup's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Isaac Virshup with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Isaac Virshup more than expected).

Fields of papers citing papers by Isaac Virshup

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Isaac Virshup. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Isaac Virshup. The network helps show where Isaac Virshup may publish in the future.

Co-authorship network of co-authors of Isaac Virshup

This figure shows the co-authorship network connecting the top 25 collaborators of Isaac Virshup. A scholar is included among the top collaborators of Isaac Virshup based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Isaac Virshup. Isaac Virshup is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

8 of 8 papers shown

1.

Virshup, Isaac, Sergei Rybakov, Fabian J. Theis, Philipp Angerer, & F. Alexander Wolf. (2024). anndata: Access and store annotated datamatrices. The Journal of Open Source Software. 9(101). 4371–4371. 43 indexed citations

2.

Sokolov, Artem, Brian R. Herb, Heather H. Creasy, et al.. (2024). MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data. Genome biology. 25(1). 205–205. 4 indexed citations

3.

Palla, Giovanni, Hannah Spitzer, Michal Klein, et al.. (2022). Squidpy: a scalable framework for spatial omics analysis. Nature Methods. 19(2). 171–178. 417 indexed citations breakdown →

4.

Megill, Colin, Bruce Martin, Charlotte A. Weaver, et al.. (2020). chanzuckerberg/cellxgene: Release 0.15.0. Zenodo (CERN European Organization for Nuclear Research). 3 indexed citations

5.

Ovchinnikov, Dmitry A., Othmar Korn, Isaac Virshup, Christine A. Wells, & Ernst J. Wolvetang. (2018). The Impact of APP on Alzheimer-like Pathogenesis and Gene Expression in Down Syndrome iPSC-Derived Neurons. Stem Cell Reports. 11(1). 32–42. 46 indexed citations

6.

Virshup, Isaac, Ingrid Leal Rojas, Oscar Haigh, et al.. (2017). Human CD141+ Dendritic Cell and CD1c+ Dendritic Cell Undergo Concordant Early Genetic Programming after Activation in Humanized Mice In Vivo. Frontiers in Immunology. 8. 1419–1419. 40 indexed citations

7.

Bower, Neil I., Katarzyna Koltowska, Cathy Pichol-Thievend, et al.. (2017). Mural lymphatic endothelial cells regulate meningeal angiogenesis in the zebrafish. Nature Neuroscience. 20(6). 774–783. 87 indexed citations

8.

Madan, Babita, Nathan Harmston, Soo Yei Ho, et al.. (2015). Wnt addiction of genetically defined cancers reversed by PORCN inhibition. Oncogene. 35(17). 2197–2207. 271 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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