Hashem Koohy

3.7k citations

30 papers · 1.5k indexed · 3 hit papers · h-index 16

Impact in

Immunology top 5%
- Immune Cell Function and Interaction
- T-cell and B-cell Immunology
- Immunotherapy and Immune Responses
- IL-33, ST2, and ILC Pathways
Oncology top 10%
- Cancer Cells and Metastasis

Papers in

Immunology 17
- T-cell and B-cell Immunology 8
- Immune Cell Function and Interaction 7
- Immunotherapy and Immune Responses 7
Algebra and Number Theory 2

Co-authors: Alison Simmons Agne Antanaviciute Marta Jagielowicz Kaushal Parikh David Fawkner-Corbett Neil Ashley Graham S. Ogg Rory Bowden
Journals: Frontiers in Immunology (5 papers)Cell (2 papers)PLoS ONE (2 papers)Nature Methods (1 paper)Nature reviews. Immunology (1 paper)
Partner nations: United Kingdom China United States

In The Last Decade

Hashem Koohy

29 papers receiving 1.4k citations

Hit Papers

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Can we predict T cell specificity with digital biology and machine learning? 2023 · 105 citations

Peers

Countries citing papers authored by Hashem Koohy

Since Specialization

Citations

This map shows the geographic impact of Hashem Koohy's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Hashem Koohy with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Hashem Koohy more than expected).

Fields of papers citing papers by Hashem Koohy

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Hashem Koohy. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Hashem Koohy. The network helps show where Hashem Koohy may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Hashem Koohy, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Hashem Koohy Line = papers co-authored together Hashem Koohy links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Quantifying conformational changes in the TCR:pMHC-I binding interface Frontiers in Immunology ·Dan Grimminger, Christopher J. Thorpe, Lucy Bailey, Charlotte M. Deane, Hashem Koohy	2024	2
2	Can AlphaFold’s breakthrough in protein structure help decode the fundamental principles of adaptive cellular immunity? Nature Methods ·Dan Grimminger, Christopher J. Thorpe, Graham S. Ogg, Charlotte M. Deane, Hashem Koohy	2024	14
3	A comparison of clustering models for inference of T cell receptor antigen specificity SHILAP Revista de lepidopterología ·D. R. Hudson, ByeongHoHam, Mark Basham, Hashem Koohy	2024	7
4	A systems approach evaluating the impact of SARS-CoV-2 variant of concern mutations on CD8+ T cell responses PubMed ·Maha Masarwa, Chloe H. Lee, Agne Antanaviciute, Alison Simmons, Hashem Koohy	2023	3
5	Group A Streptococcus induces CD1a-autoreactive T cells and promotes psoriatic inflammation Science Immunology ·Yi‐Ling Chen, MeyersCA, Rosana Ottakandathil Babu, Jeongmin Woo, A Iamandei, Clare S. Hardman, Prathiba Kurupati, Lea Nußbaum, Fei Gao, Tao Dong, Kristin Ladell, David A. Price, David A. Duncan, David Johnson, Uzi Gileadi, Hashem Koohy, Graham S. Ogg	2023	8
6	Can we predict T cell specificity with digital biology and machine learning? Nature reviews. Immunology ·D. R. Hudson, Ricardo A. Fernandes, Mark Basham, Graham S. Ogg, Hashem Koohy Hit paper breakdown →	2023	105
7	Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens Briefings in Bioinformatics ·Maha Masarwa, Chloe H. Lee, Ruichong Ma, Isaac Woodhouse, Jeongmin Woo, Vasily O. Tsvetkov, Dmitrii S. Shcherbinin, Agne Antanaviciute, Annette Casiano, Margarida Rei, Alison Simmons, Hashem Koohy	2022	24
8	Dual RNA sequencing reveals dendritic cell reprogramming in response to typhoidal Salmonella invasion Communications Biology ·Anna Aulicino, Agne Antanaviciute, Joe N. Frost, Isabelle Staude, M. Gol Sanamloo, Moustafa Attar, Marta Jagielowicz, Philip Hublitz, Daniel Cox, Lorena Preciado‐Llanes, Giorgio Napolitani, Rory Bowden, Hashem Koohy, Hal Drakesmith, Alison Simmons	2022	8
9	HLA‐dependent variation in SARS‐CoV‐2 CD8 ⁺ T cell cross‐reactivity with human coronaviruses Immunology ·Maha Masarwa, Chloe H. Lee, Mariana Pereira Pinho, Rosana Ottakandathil Babu, Jeongmin Woo, Agne Antanaviciute, Alison Simmons, Graham S. Ogg, Hashem Koohy	2022	13
10	Spatiotemporal analysis of human intestinal development at single-cell resolution Cell ·David Fawkner-Corbett, Agne Antanaviciute, Kaushal Parikh, Marta Jagielowicz, Isabelle Staude, Tarun Gupta, Neil Ashley, Doran Khamis, Darren Fowler, Edward Morrissey, Chris Cunningham, P. V. Johnson, Hashem Koohy, Alison Simmons Hit paper breakdown →	2021	296
11	SARS-CoV-2 peptides bind to NKG2D and increase NK cell activity Cellular Immunology ·Hanna Kim, Jae‐Eun Byun, Suk Ran Yoon, Hashem Koohy, Haiyoung Jung, Inpyo Choi	2021	21
12	Predicting Cross-Reactivity and Antigen Specificity of T Cell Receptors Frontiers in Immunology ·Chloe H. Lee, Mariolina Salio, Giorgio Napolitani, Graham S. Ogg, Alison Simmons, Hashem Koohy	2020	46
13	Potential CD8+ T Cell Cross-Reactivity Against SARS-CoV-2 Conferred by Other Coronavirus Strains Frontiers in Immunology ·Chloe H. Lee, Mariana Pereira Pinho, Maha Masarwa, Isaac Woodhouse, Graham S. Ogg, Alison Simmons, Giorgio Napolitani, Hashem Koohy	2020	38
14	Single-cell atlas of colonic CD8+ T cells in ulcerative colitis Nature Medicine ·Daniele Corridoni, Agne Antanaviciute, Tarun Gupta, David Fawkner-Corbett, Anna Aulicino, Marta Jagielowicz, Kaushal Parikh, Emmanouela Repapi, Steve L. Taylor, Dai Ishikawa, Ryo Hatano, Taketo Yamada, Wei Xin, Hubert Slawinski, Rory Bowden, Giorgio Napolitani, Oliver Brain, Chikao Morimoto, Hashem Koohy, Alison Simmons	2020	129
15	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease Cell ·James Kinchen, Hannah H. Chen, Kaushal Parikh, Agne Antanaviciute, Marta Jagielowicz, David Fawkner-Corbett, Neil Ashley, Laura Cubitt, Esther Mellado-Gomez, Moustafa Attar, Eshita Sharma, Quin F. Wills, Rory Bowden, Felix Clemens Richter, David Ahern, Kamal D. Puri, Jill Hénault, François G. Gervais, Hashem Koohy, Alison Simmons Hit paper breakdown →	2018	450
16	Local Chromatin Features Including PU.1 and IKAROS Binding and H3K4 Methylation Shape the Repertoire of Immunoglobulin Kappa Genes Chosen for V(D)J Recombination Frontiers in Immunology ·Louise S. Matheson, Daniel J. Bolland, Peter Chovanec, Felix Krueger, Simon Andrews, Hashem Koohy, Anne E. Corcoran	2017	23
17	Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination Cell Reports ·Daniel J. Bolland, Hashem Koohy, Andrew L. Wood, Louise S. Matheson, Felix Krueger, Michael J. T. Stubbington, Husheng Xiong, Peter Chovanec, William Manga Mokofe, Kristina Tabbada, Simon Andrews, Mikhail Spivakov, Anne E. Corcoran	2016	48
18	A lesson from the ice bucket challenge: using social networks to publicize science Frontiers in Genetics ·Hashem Koohy, H. Waswa	2014	25
19	A Comparison of Peak Callers Used for DNase-Seq Data PLoS ONE ·Hashem Koohy, Thomas A. Down, Mikhail Spivakov, Tim Hubbard	2014	47
20	Chromatin Accessibility Data Sets Show Bias Due to Sequence Specificity of the DNase I Enzyme PLoS ONE ·Hashem Koohy, Thomas A. Down, Tim Hubbard	2013	49

About Hashem Koohy

Hashem Koohy is a scholar working on Immunology, Algebra and Number Theory, Molecular Biology, Radiology, Nuclear Medicine and Imaging and Infectious Diseases, having authored 30 papers that have together received 1.5k indexed citations. Recurring topics across this work include vaccines and immunoinformatics approaches (11 papers), T-cell and B-cell Immunology (8 papers), Immune Cell Function and Interaction (7 papers), Immunotherapy and Immune Responses (7 papers), Monoclonal and Polyclonal Antibodies Research (5 papers), Genomics and Chromatin Dynamics (4 papers), SARS-CoV-2 and COVID-19 Research (3 papers) and Protein Structure and Dynamics (2 papers). The work is most often cited by research in Immunology (598 citations), Oncology (310 citations), Molecular Biology (765 citations), Genetics (252 citations) and Gastroenterology (49 citations). Hashem Koohy has collaborated with scholars based in United Kingdom, China and United States. Frequent co-authors include Alison Simmons, Agne Antanaviciute, Marta Jagielowicz, Kaushal Parikh, David Fawkner-Corbett, Neil Ashley, Graham S. Ogg, Rory Bowden, Thomas A. Down and Tarun Gupta. Their work appears in journals such as Frontiers in Immunology, Cell, PLoS ONE, Nature Methods and Nature reviews. Immunology.

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