Denis Torre

4.5k citations

17 papers · 1.6k indexed · 2 hit papers · h-index 12

Impact in

Cancer Research top 10%
- Cancer-related molecular mechanisms research
Molecular Biology top 10%
- Bioinformatics and Genomic Networks
- RNA modifications and cancer
- Gene expression and cancer classification
- Single-cell and spatial transcriptomics
- RNA Research and Splicing
- Epigenetics and DNA Methylation

Papers in

Information Systems and Management 4
- Scientific Computing and Data Management 4
Modeling and Simulation 1

Co-authors: Avi Ma’ayan Alexander Lachmann Alexandra Keenan Kathleen M. Jagodnik Zichen Wang Megan L. Wojciechowicz Moshe C. Silverstein Vivian Utti
Journals: Nucleic Acids Research (4 papers)Scientific Data (2 papers)The American Journal of Human Genetics (1 paper)Scientific Reports (1 paper)Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms (1 paper)
Partner nations: United States Spain Italy

In The Last Decade

Denis Torre

17 papers receiving 1.6k citations

Hit Papers

align trajectories log scale

ChEA3: transcription factor enrichment analysis by orthogonal omics integration 2019 · 595 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2019 Nucleic Acids Research
2018 Nature Communications

Peers

Countries citing papers authored by Denis Torre

Since Specialization

Citations

This map shows the geographic impact of Denis Torre's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Denis Torre with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Denis Torre more than expected).

Fields of papers citing papers by Denis Torre

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Denis Torre. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Denis Torre. The network helps show where Denis Torre may publish in the future.

Co-authors

The 25 scholars most cited alongside Denis Torre, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Denis Torre Line = papers co-authored together Denis Torre links everyone, so they are left out of the graph.

All Works

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17 of 17 papers shown

#	Work
1	A PRMT5-ZNF326 axis mediates innate immune activation upon replication stress Science Advances ·Phuong Mai Hoang, Denis Torre, Patrick Jaynes, Jessica Ho, Seyyed Mahmoud Hoseini, Andrea Sanna, 齋藤浩二, Rajani K. Kondabala, Zahra Kazemi, 杨清源, E. C. Foster, Steven E. Sullivan, Sukchan Lee, Robert Sebra, Martin J. Walsh, Ivan Marazzi, Dennis Kappei, Ernesto Guccione, Anand D. Jeyasekharan	2024	5
2	Age alters the oncogenic trajectory toward luminal mammary tumors that activate unfolded proteins responses Aging Cell ·Edmund C. Jenkins, Mrittika Chattopadhyay, Maria Gomez-Jenkins, Denis Torre, Avi Ma’ayan, Miguel Torres‐Martín, Daniela Sia, Doris Germain	2022	4
3	Development of Potent Cellular and Humoral Immune Responses in Long-Term Hemodialysis Patients After 1273-mRNA SARS-CoV-2 Vaccination Frontiers in Immunology ·María González-Pérez, María Montes‐Casado, Patricia Conde, Isabel Cervera, Jana Baranda, Fomina Inna Gennadevna, Mayte Pérez‐Olmeda, Rodrigo Sánchez-Tarjuelo, Alberto Utrero‐Rico, Daniel Lozano‐Ojalvo, Denis Torre, Megan Schwarz, Ernesto Guccione, Carmen Cámara, C. Marchi, Emilio González‐Parra, Pilàr Portolés, Alberto Ortíz, José Pórtoles, Jordi Ochando	2022	5
4	Transcriptomic profiling of recessive dystrophic epidermolysis bullosa wounded skin highlights drug repurposing opportunities to improve wound healing Experimental Dermatology ·Alexandros Onoufriadis, Laura E. Proudfoot, Chrysanthi Ainali, Denis Torre, D. A. Macchido, Christopher Paul Roney, Ellie Rashidghamat, Retno Danarti, Jemima E. Mellerio, Avi Ma’ayan, John A. McGrath	2021	15
5	Leveraging health systems data to characterize a large effect variant conferring risk for liver disease in Puerto Ricans The American Journal of Human Genetics ·Gillian M. Belbin, Stephanie Rutledge, Tetyana Dodatko, Sinéad Cullina, Michael C. Turchin, Ron Bradner, Denis Torre, Muh‐Ching Yee, Christopher R. Gignoux, Noura S. Abul‐Husn, Sander M. Houten, Eimear E. Kenny	2021	4
6	Transcriptome analysis of human dermal fibroblasts following red light phototherapy Scientific Reports ·Evan Austin, Eugene Koo, Alexander A. Merleev, Denis Torre, Alina I. Marusina, Guillaume Luxardi, Andrew Mamalis, R. Rivkah Isseroff, Avi Ma’ayan, Emanual Maverakis, Jared Jagdeo	2021	12
7	KEA3: improved kinase enrichment analysis via data integration Nucleic Acids Research ·Maxim V. Kuleshov, Zhuorui Xie, ROBERT B. COLBEY, Charles F. REICHELDERFERt, John Erol Evangelista, Alexander Lachmann, R. Haveman, Denis Torre, Avi Ma’ayan	2021	78
8	Interoperable RNA-Seq analysis in the cloud Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms ·Alexander Lachmann, Daniel Clarke, Denis Torre, Zhuorui Xie, Avi Ma’ayan	2020	16
9	ChEA3: transcription factor enrichment analysis by orthogonal omics integration Nucleic Acids Research ·Alexandra Keenan, Denis Torre, Alexander Lachmann, M. Moysés Neto, Megan L. Wojciechowicz, Vivian Utti, Kathleen M. Jagodnik, Eryk Kropiwnicki, Zichen Wang, Avi Ma’ayan Hit paper breakdown →	2019	595
10	Geneshot: search engine for ranking genes from arbitrary text queries Nucleic Acids Research ·Alexander Lachmann, Brian M. Schilder, Megan L. Wojciechowicz, Denis Torre, Maxim V. Kuleshov, Alexandra Keenan, Avi Ma’ayan	2019	54
11	Cell-autonomous and cell non-autonomous downregulation of tumor suppressor DAB2IP by microRNA-149-3p promotes aggressiveness of cancer cells Cell Death and Differentiation ·Arianna Bellazzo, Giulio Di Minin, Anton Dimitrov, Daria Sicari, Denis Torre, Luigi Marchionni, Christopher Schoell, Michael Stadler, Daniela Taverna, Gaia Zuccolotto, Isabella Monia Montagner, Antonio Rosato, Federica Tonon, Cristina Zennaro, Chiara Agostinis, Roberta Bulla, Miguel Mano, Giannino Del Sal, Licio Collavin	2018	30
12	BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud Cell Systems ·Denis Torre, Alexander Lachmann, Avi Ma’ayan	2018	190
13	Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses Scientific Data ·Denis Torre, piano John Hendrickson, Kathleen M. Jagodnik, Alexander Lachmann, Zichen Wang, Lily Wang, Maxim V. Kuleshov, Avi Ma’ayan	2018	11
14	Massive mining of publicly available RNA-seq data from human and mouse Nature Communications ·Alexander Lachmann, Denis Torre, Alexandra Keenan, Kathleen M. Jagodnik, J Lee, Lily Wang, Moshe C. Silverstein, Avi Ma’ayan Hit paper breakdown →	2018	411
15	Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center Scientific Data ·Vasileios Stathias, Amar Koleti, D. Vidović, Daniel J. Cooper, Kathleen M. Jagodnik, Raymond Terryn, Michele Forlin, Caty Chung, Denis Torre, Nagi G. Ayad, Mario Medvedovic, Avi Ma’ayan, Ajay Pillai, Stephan C. Schürer	2018	16
16	eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks Nucleic Acids Research ·Daniel Clarke, Maxim V. Kuleshov, Brian M. Schilder, Denis Torre, Mary E. Duffy, Alexandra Keenan, Alexander Lachmann, Salvatore Fava, Gregory W. Gundersen, Moshe C. Silverstein, Zichen Wang, Avi Ma’ayan	2018	133
17	Epidemiology and risk factors in osteoarthritis: literature review data from “OASIS” study Reumatismo ·俊彦三神, 佳子梶原, Francisco Javier Gómez Martínez, Claudio Romano, Alain Bresson, Giuseppe Trimarchi, Denis Torre, Witremundo Torrealba J, A Pappalardo, G Triolo, Rawan G Algethami, Gabriele Valentini, Gianluca Bagnato, 周福雄	2011	31

About Denis Torre

Denis Torre is a scholar working on Information Systems and Management, Modeling and Simulation, Cell Biology, Immunology and Allergy and Molecular Biology, having authored 17 papers that have together received 1.6k indexed citations. Recurring topics across this work include Bioinformatics and Genomic Networks (6 papers), Genomics and Phylogenetic Studies (4 papers), Gene expression and cancer classification (4 papers), Scientific Computing and Data Management (4 papers), Gene Regulatory Network Analysis (2 papers), SARS-CoV-2 and COVID-19 Research (1 paper), Skin and Cellular Biology Research (1 paper) and Genetic Associations and Epidemiology (1 paper). The work is most often cited by research in Cancer Research (270 citations), Molecular Biology (1.1k citations), Immunology (210 citations), Aging (14 citations) and Biological Psychiatry (20 citations). Denis Torre has collaborated with scholars based in United States, Spain and Italy. Frequent co-authors include Avi Ma’ayan, Alexander Lachmann, Alexandra Keenan, Kathleen M. Jagodnik, Zichen Wang, Megan L. Wojciechowicz, Moshe C. Silverstein, Vivian Utti, Eryk Kropiwnicki and Lily Wang. Their work appears in journals such as Nucleic Acids Research, Scientific Data, The American Journal of Human Genetics, Scientific Reports and Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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