Ci Chu

4.7k citations

17 papers · 3.4k indexed · 3 hit papers · h-index 13

Impact in

Cancer Research top 0.5%
- Cancer-related molecular mechanisms research
- MicroRNA in disease regulation
Molecular Biology top 2%
- RNA modifications and cancer
- RNA Research and Splicing
- Circular RNAs in diseases
- RNA and protein synthesis mechanisms
- Genomics and Chromatin Dynamics
- CRISPR and Genetic Engineering

Papers in ⓘ

Molecular Biology 15
- RNA Research and Splicing 10
- RNA modifications and cancer 9
- Genomics and Chromatin Dynamics 3
- Lipid Membrane Structure and Behavior 2
- Advanced biosensing and bioanalysis techniques 1
Cancer Research 10
- Cancer-related molecular mechanisms research 10
- MicroRNA in disease regulation 1

Co-authors: Howard Y. Chang (12 shared papers)Kun Qu (4 shared papers)Franklin L. Zhong (1 shared paper)Maja Artandi (1 shared paper)Jeffrey J. Quinn (3 shared papers)Ryan A. Flynn (4 shared papers)Qiangfeng Cliff Zhang (2 shared papers)Maheetha Bharadwaj (2 shared papers)
Journals: Nature Structural & Molecular Biology (2 papers)Genome biology (2 papers)Journal of Visualized Experiments (2 papers)Stem Cells (1 paper)Methods (1 paper)
Partner nations: United States Germany Singapore

In The Last Decade

Ci Chu

15 papers receiving 3.4k citations

Hit Papers

align trajectories log scale

Systematic Discovery of Xist RNA Binding Proteins 2015 · 777 citations

Peers

Countries citing papers authored by Ci Chu

Since Specialization

Citations

This map shows the geographic impact of Ci Chu's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ci Chu with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ci Chu more than expected).

Fields of papers citing papers by Ci Chu

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ci Chu. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ci Chu. The network helps show where Ci Chu may publish in the future.

Co-authors

The 25 scholars most cited alongside Ci Chu, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Ci Chu Line = papers co-authored together Ci Chu links everyone, so they are left out of the graph.

All Works

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17 of 17 papers shown

#	Work
1	Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions Molecular Cell ·Ci Chu, Kun Qu, Franklin L. Zhong, Maja Artandi, Howard Y. Chang Hit paper breakdown →	2011	992
2	Systematic Discovery of Xist RNA Binding Proteins Cell ·Ci Chu, Qiangfeng Cliff Zhang, (unknown), Ryan A. Flynn, Maheetha Bharadwaj, J. Mauro Calabrese, Terry Magnuson, Édith Heard, Howard Y. Chang Hit paper breakdown →	2015	777
3	Control of somatic tissue differentiation by the long non-coding RNA TINCR Nature ·Markus Kretz, Zurab Siprashvili, Ci Chu, Dan E. Webster, Ashley Zehnder, Kun Qu, Carolyn Lee, Ross J. Flockhart, Abigail F. Groff, Jennifer Chow, Danielle Johnston, Grace Kim, Robert C. Spitale, Ryan A. Flynn, Grace X. Y. Zheng, Subhadra Aiyer, Arjun Raj, John L. Rinn, Howard Y. Chang, Paul A. Khavari Hit paper breakdown →	2012	742
4	Chromatin Isolation by RNA Purification (ChIRP) Journal of Visualized Experiments ·Ci Chu, Jeffrey J. Quinn, Howard Y. Chang	2012	281
5	Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification Nature Biotechnology ·Jeffrey J. Quinn, İbrahim Ilik, Kun Qu, Plamen Georgiev, Ci Chu, Asifa Akhtar, Howard Y. Chang	2014	138
6	Technologies to probe functions and mechanisms of long noncoding RNAs Nature Structural & Molecular Biology ·Ci Chu, Robert C. Spitale, Howard Y. Chang	2015	115
7	Chromatin Isolation by RNA Purification (ChIRP) Journal of Visualized Experiments ·Ci Chu, Jeffrey J. Quinn, Howard Y. Chang	2012	92
8	7SK-BAF axis controls pervasive transcription at enhancers Nature Structural & Molecular Biology ·Ryan A. Flynn, T. Brian, Adam J. Rubin, Eliezer Calo, Byron Lee, Hannes Y. Kuchelmeister, Michael J Rale, Ci Chu, Eric T. Kool, Joanna Wysocka, Paul A. Khavari, Howard Y. Chang	2016	86
9	The Transcription Factor Zfp281 Controls Embryonic Stem Cell Pluripotency by Direct Activation and Repression of Target Genes Stem Cells ·Zheng-Xu Wang, Christina Hui Leng Teh, Caroline Man-Yee Chan, Ci Chu, Michael Roßbach, Galih Kunarso, Tahira Bee Allapitchay, Kee Yew Wong, Lawrence W. Stanton	2008	59
10	Understanding RNA-Chromatin Interactions Using Chromatin Isolation by RNA Purification (ChIRP) Methods in molecular biology ·Ci Chu, Howard Y. Chang	2016	52
11	ChIRP-MS: RNA-Directed Proteomic Discovery Methods in molecular biology ·Ci Chu, Howard Y. Chang	2018	42
12	Electroneutral Polymer Nanodiscs Enable Interference‐Free Probing of Membrane Proteins in a Lipid‐Bilayer Environment Small ·David Glueck, Anne Grethen, Manabendra Das, Ogochukwu Patricia Mmeka, Eugenio P. Patallo, Annette Meister, Ritu Rajender, Stefan Kins, Markus Räschle, Julian Victor, Ci Chu, Manuel Etzkorn, Zoe Köck, Frank Bernhard, Jonathan O. Babalola, Carolyn Vargas, Sandro Keller	2022	27
13	PIRCh-seq: functional classification of non-coding RNAs associated with distinct histone modifications Genome biology ·Jingwen Fang, Qing Ma, Ci Chu, Beibei Huang, Lingjie Li, Pengfei Cai, Pedro J. Batista, Karen Tolentino, Jin Xu, Rui Li, Pengcheng Du, Kun Qu, Howard Y. Chang	2019	23
14	Dissection of multiple sclerosis genetics identifies B and CD4+ T cells as driver cell subsets Genome biology ·Michael H. Guo, Prashanth Sama, Brenna A. LaBarre, Hrishikesh Lokhande, John Balibalos, Ci Chu, Xiaomi Du, Pouya Kheradpour, Charles C. Kim, Taylor Oniskey, Thomas M. Snyder, Damien Z. Soghoian, Howard L. Weiner, Tanuja Chitnis, Nikolaos A. Patsopoulos	2022	8
15	Systematic Discovery of Xist RNA Binding Proteins UNC Libraries ·Maheetha Bharadwaj, Ryan A. Flynn, Terry Magnuson, Ci Chu, Qiangfeng Cliff Zhang, J. Mauro Calabrese, Simão Teixeira Da Rocha, Howard Y. Chang, Édith Heard	2020	3
16	A pooled Cell Painting CRISPR screening platform enables de novo inference of gene function by self-supervised deep learning Nature Communications ·Srinivasan Sivanandan, Bobby Leitmann, Eric Lubeck, Mohammad M. Sultan, Panagiotis Stanitsas, Navpreet Ranu, Alexis Ewer, Jordan E. Mancuso, Zachary F. Phillips, Albert M. Kim, John W. Bisognano, John Cesarek, Fiorella Ruggiu, David Feldman, Daphne Koller, Eilon Sharon, Ajamete Kaykas, Max R. Salick, Ci Chu	2025	0
17	Capturing G protein-coupled receptors into native lipid-bilayer nanodiscs using new diisobutylene/maleic acid (DIBMA) copolymers Methods ·Ci Chu, Carolyn Vargas, Maria Carolina Barbosa, Simon Sommerhage, Gerald N. Rechberger, David Pahovnik, Ema Žagar, Gunnar F. Schröder, Sandro Keller, Manuel Etzkorn	2025	0

About Ci Chu

Ci Chu is a scholar working on Molecular Biology, Cancer Research, Spectroscopy, Endocrinology and Biophysics, having authored 17 papers that have together received 3.4k indexed citations. Recurring topics across this work include RNA Research and Splicing (10 papers), Cancer-related molecular mechanisms research (10 papers), RNA modifications and cancer (9 papers), Genomics and Chromatin Dynamics (3 papers), Lipid Membrane Structure and Behavior (2 papers), Advanced biosensing and bioanalysis techniques (1 paper), MicroRNA in disease regulation (1 paper) and Cell Image Analysis Techniques (1 paper). The work is most often cited by research in Cancer Research (2.4k citations), Molecular Biology (3.1k citations), Endocrinology (172 citations), Genetics (238 citations) and Immunology (159 citations). Ci Chu has collaborated with scholars based in United States, Germany and Singapore. Frequent co-authors include Howard Y. Chang, Kun Qu, Franklin L. Zhong, Maja Artandi, Jeffrey J. Quinn, Ryan A. Flynn, Qiangfeng Cliff Zhang, Maheetha Bharadwaj, Édith Heard and J. Mauro Calabrese. Their work appears in journals such as Nature Structural & Molecular Biology, Genome biology, Journal of Visualized Experiments, Stem Cells and Methods.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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