Chun-Chi Liu

3.4k citations

45 papers · 2.6k indexed · 1 hit paper · h-index 19

Co-authors: Xianghong Jasmine Zhou Shihua Zhang Yu‐Ting Tseng Gangning Liang Peter A. Jones Hsien‐Da Huang Anas Khaleel Kuang‐Wen Liao
Topics: Gene expression and cancer classification (12 papers)Bioinformatics and Genomic Networks (11 papers)Genomics and Chromatin Dynamics (10 papers)
Cited by: Cancer Research Molecular Biology Computational Mathematics
Journals: Cell Proceedings of the National Academy of Sciences Nucleic Acids Research
Partner nations: Taiwan United States China

In The Last Decade

Chun-Chi Liu

45 papers receiving 2.5k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions

2013 892 citations Sheng‐Da Hsu, Yu‐Ting Tseng et al. Nucleic Acids Research profile →

Peers

Countries citing papers authored by Chun-Chi Liu

Since Specialization

Citations

This map shows the geographic impact of Chun-Chi Liu's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Chun-Chi Liu with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Chun-Chi Liu more than expected).

Fields of papers citing papers by Chun-Chi Liu

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Chun-Chi Liu. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Chun-Chi Liu. The network helps show where Chun-Chi Liu may publish in the future.

Co-authorship network of co-authors of Chun-Chi Liu

This figure shows the co-authorship network connecting the top 25 collaborators of Chun-Chi Liu. A scholar is included among the top collaborators of Chun-Chi Liu based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Chun-Chi Liu. Chun-Chi Liu is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	cfSNV: a software tool for the sensitive detection of somatic mutations from cell-free DNA 2023 ·Nature Protocols ·Shuo Li,Ran Hu,C.J. Small,(unknown),Chun-Chi Liu,Xianghong Jasmine Zhou,Wenyuan Li	4
2	Genomic characterization of a rare Carica papaya X chromosome mutant reveals a candidate monodehydroascorbate reductase 4 gene involved in all-hermaphrodite phenomenon 2021 ·Molecular Genetics and Genomics ·(unknown),Hiroki Ueno,Hideo Matsumura,Naoya Urasaki,Chen-Yu Lee,Fure-Chyi Chen,(unknown),Chun-Chi Liu,(unknown),Kazuhiko Tarora,Jingyi Li,(unknown),Hsin‐Mei Ku	1
3	Inferring condition-specific targets of human TF-TF complexes using ChIP-seq data 2017 ·BMC Genomics ·(unknown),(unknown),(unknown),Erik Andrews,Chao Cheng,Chun-Chi Liu,Jeremy J.W. Chen	1
4	iTAR: a web server for identifying target genes of transcription factors using ChIP-seq or ChIP-chip data 2016 ·BMC Genomics ·(unknown),Erik Andrews,(unknown),Wanyu Wang,Jeremy J.W. Chen,Mark Gerstein,Chun-Chi Liu,Chao Cheng	2
5	Pushing the annotation of cellular activities to a higher resolution: Predicting functions at the isoform level 2015 ·Methods ·Wenyuan Li,Chun-Chi Liu,Shuli Kang,Jianrong Li,Yu‐Ting Tseng,Xianghong Jasmine Zhou	8
6	DNA binding by FOXP3 domain-swapped dimer suggests mechanisms of long-range chromosomal interactions 2015 ·Nucleic Acids Research ·Yongheng Chen,Chunxia Chen,Zhe Zhang,Chun-Chi Liu,Matthew E. Johnson,Celso A. Espinoza,Lee Edsall,Bing Ren,Xianghong Jasmine Zhou,Struan F.A. Grant,Andrew D. Wells,Lin Chen	43
7	Molecular recognition of CYP26A1 binding pockets and structure–activity relationship studies for design of potent and selective retinoic acid metabolism blocking agents 2014 ·Journal of Molecular Graphics and Modelling ·Bin Sun,Shuai Song,Chenzhou Hao,Wanxu Huang,Chun-Chi Liu,(unknown),Bin Lin,Maosheng Cheng,Dongmei Zhao	12
8	DiseaseConnect: a comprehensive web server for mechanism-based disease–disease connections 2014 ·Nucleic Acids Research ·Chun-Chi Liu,Yu‐Ting Tseng,Wenyuan Li,Chia-Yu Wu,(unknown),Andrey Rzhetsky,Fengzhu Sun,Michael S. Waterman,Jeremy J.W. Chen,Preet M. Chaudhary,Joseph Loscalzo,Edward D. Crandall,Xianghong Jasmine Zhou	80
9	miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactionsbreakdown → 2013 ·Nucleic Acids Research ·Sheng‐Da Hsu,Yu‐Ting Tseng,Sirjana Shrestha,Yu‐Ling Lin,Anas Khaleel,Chih‐Hung Chou,(unknown),Hsi‐Yuan Huang,Ching-Min Lin,Shu-Yi Ho,(unknown),Feng‐Mao Lin,Tzu‐Hao Chang,Shun‐Long Weng,Kuang‐Wen Liao,I‐En Liao,Chun-Chi Liu,Hsien‐Da Huang	892
10	DPRP: a database of phenotype-specific regulatory programs derived from transcription factor binding data 2013 ·Nucleic Acids Research ·David T.W. Tzeng,Yu‐Ting Tseng,Matthew Ung,I‐En Liao,Chun-Chi Liu,Chao Cheng	3
11	Discovering chromatin motifs using FAIRE sequencing and the human diploid genome 2013 ·BMC Genomics ·(unknown),Michael Buck,(unknown),(unknown),(unknown),Jeremy J.W. Chen,Chao Cheng,Chun-Chi Liu	3
12	REACTIN: Regulatory activity inference of transcription factors underlying human diseases with application to breast cancer 2013 ·BMC Genomics ·Mingzhu Zhu,Chun-Chi Liu,Chao Cheng	17
13	Algorithm to Identify Frequent Coupled Modules from Two-Layered Network Series: Application to Study Transcription and Splicing Coupling 2012 ·Journal of Computational Biology ·Wenyuan Li,Chao Dai,Chun-Chi Liu,Xianghong Jasmine Zhou	12
14	Identification and Characterization of an RTX Toxin–Like Gene and Its Operon from Avibacterium paragallinarum 2012 ·Avian Diseases ·(unknown),(unknown),Jui‐Hung Shien,Chun-Chi Liu,(unknown),(unknown),Poa‐Chun Chang	8
15	Polycomb-Repressed Genes Have Permissive Enhancers that Initiate Reprogramming 2011 ·Cell ·Phillippa C. Taberlay,Theresa K. Kelly,Chun-Chi Liu,Jueng Soo You,Daniel D. De Carvalho,Tina Branscombe Miranda,Xianghong Jasmine Zhou,Gangning Liang,Peter A. Jones	139
16	Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation 2011 ·PLoS Computational Biology ·Wenyuan Li,Chun-Chi Liu,(unknown),Haifeng Li,Michael S. Waterman,Xianghong Jasmine Zhou	88
17	Bayesian approach to transforming public gene expression repositories into disease diagnosis databases 2010 ·Proceedings of the National Academy of Sciences ·Haiyan Huang,Chun-Chi Liu,Xianghong Jasmine Zhou	41
18	The Putative Tumor Suppressor microRNA-101 Modulates the Cancer Epigenome by Repressing the Polycomb Group Protein EZH2 2009 ·Cancer Research ·Jeffrey M. Friedman,Gangning Liang,Chun-Chi Liu,Erika M. Wolff,Yvonne Tsai,Wei Ye,Xianghong Jasmine Zhou,Peter A. Jones	307
19	Discovering Causal and Temporal Relations in Biomedical Texts. 2009 ·National Conference on Artificial Intelligence ·(unknown),Jerry R. Hobbs,Chun-Chi Liu,Xianghong Jasmine Zhou	6
20	Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis 2007 ·BMC Bioinformatics ·Chun-Chi Liu,Chin-Chung Lin,Ker-Chau Li,(unknown),(unknown),Ming‐Te Yang,Pan‐Chyr Yang,Pei-Chun Chang,Jeremy J.W. Chen	4

About Chun-Chi Liu

Chun-Chi Liu is a scholar working on Molecular Biology, Cancer Research and Computational Theory and Mathematics, having authored 45 papers that have together received 2.6k indexed citations. Recurring topics across this work include Gene expression and cancer classification (12 papers), Bioinformatics and Genomic Networks (11 papers) and Genomics and Chromatin Dynamics (10 papers). The work is most often cited by research in Cancer Research (1.1k citations), Molecular Biology (2.1k citations) and Computational Mathematics (8 citations). Chun-Chi Liu has collaborated with scholars based in Taiwan, United States and China. Frequent co-authors include Xianghong Jasmine Zhou, Shihua Zhang, Yu‐Ting Tseng, Gangning Liang, Peter A. Jones, Hsien‐Da Huang, Anas Khaleel, Kuang‐Wen Liao, Sirjana Shrestha and Sheng‐Da Hsu. Their work appears in journals such as Cell, Proceedings of the National Academy of Sciences and Nucleic Acids Research.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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