Chirag Jain

11.0k total citations · 1 hit paper
36 papers, 3.8k citations indexed

About

Chirag Jain is a scholar working on Molecular Biology, Artificial Intelligence and Plant Science. According to data from OpenAlex, Chirag Jain has authored 36 papers receiving a total of 3.8k indexed citations (citations by other indexed papers that have themselves been cited), including 19 papers in Molecular Biology, 13 papers in Artificial Intelligence and 6 papers in Plant Science. Recurrent topics in Chirag Jain's work include Genomics and Phylogenetic Studies (15 papers), RNA and protein synthesis mechanisms (6 papers) and Chromosomal and Genetic Variations (6 papers). Chirag Jain is often cited by papers focused on Genomics and Phylogenetic Studies (15 papers), RNA and protein synthesis mechanisms (6 papers) and Chromosomal and Genetic Variations (6 papers). Chirag Jain collaborates with scholars based in India, United States and Germany. Chirag Jain's co-authors include Adam M. Phillippy, Srinivas Aluru, Luis M. Rodriguez‐R, Konstantinos T. Konstantinidis, Sergey Koren, Alexander Dilthey, Arang Rhie, Nancy F. Hansen, Haowen Zhang and Brian P. Walenz and has published in prestigious journals such as Nucleic Acids Research, Nature Communications and Bioinformatics.

In The Last Decade

Chirag Jain

30 papers receiving 3.7k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

2018 3.1k citations Chirag Jain, Luis M. Rodriguez‐R et al. Nature Communications profile →

Peers

Chirag Jain

MB

ECOLO

PS

FS

ENDOC

Mikhail Kolmogorov United States

James Drake United States

Jeffrey Yuan United States

Dmitry Meleshko United States

Alex Copeland United States

Aaron A. Klammer United States

Vyacheslav Chetvernin United States

Alicia Clum United States

Azat Badretdin United States

Bertrand Néron France

Mikhail Kolmogorov United States

Chirag Jain

2.8k ×1.2

MB

1.2k ×1.0

ECOLO

1.1k ×1.4

PS

323 ×0.7

FS

318 ×0.9

ENDOC

Citations per year, relative to Chirag Jain Chirag Jain (= 1×) peers Mikhail Kolmogorov

Countries citing papers authored by Chirag Jain

Since Specialization

Citations

This map shows the geographic impact of Chirag Jain's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Chirag Jain with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Chirag Jain more than expected).

Fields of papers citing papers by Chirag Jain

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Chirag Jain. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Chirag Jain. The network helps show where Chirag Jain may publish in the future.

Co-authorship network of co-authors of Chirag Jain

This figure shows the co-authorship network connecting the top 25 collaborators of Chirag Jain. A scholar is included among the top collaborators of Chirag Jain based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Chirag Jain. Chirag Jain is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

1.

Jain, Chirag, et al.. (2024). Haplotype-aware sequence alignment to pangenome graphs. Genome Research. 34(9). 1265–1275. 2 indexed citations

2.

Jain, Chirag, et al.. (2024). Formulation and evaluation of toothpaste for sensitivity. 7(2). 41–49.

3.

Jain, Chirag, et al.. (2024). On the Coverage Required for Diploid Genome Assembly. 3636–3641.

4.

Jain, Chirag, et al.. (2024). Co-linear chaining on pangenome graphs. Algorithms for Molecular Biology. 19(1). 4–4. 4 indexed citations

5.

Jain, Chirag, et al.. (2024). Evaluating Modern Information Extraction Techniques for Complex Document Structures. 1–5. 1 indexed citations

6.

Karki, Rajesh, et al.. (2024). Illness and Gender Classification of Cattle. 1–6. 1 indexed citations

7.

Pal, Debnath, et al.. (2024). Telomere-to-telomere assembly by preserving contained reads. Genome Research. 34(11). 1908–1918. 1 indexed citations

8.

Jain, Chirag, et al.. (2023). Securing E-Voting using Hyperledger Fabric: A Permissioned Blockchain Approach. 7. 539–546.

9.

Jain, Chirag. (2023). Coverage-preserving sparsification of overlap graphs for long-read assembly. Bioinformatics. 39(3). 3 indexed citations

10.

Jain, Chirag, et al.. (2022). Accelerating minimap2 for long-read sequencing applications on modern CPUs. Nature Computational Science. 2(2). 78–83. 35 indexed citations

11.

Cartney, Ann M. Mc, Kishwar Shafin, Michael Alonge, et al.. (2022). Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies. Nature Methods. 19(6). 687–695. 54 indexed citations

12.

Jain, Chirag, et al.. (2022). Algorithms for Colinear Chaining with Overlaps and Gap Costs. Journal of Computational Biology. 29(11). 1237–1251. 6 indexed citations

13.

Jain, Chirag, Arang Rhie, Nancy F. Hansen, Sergey Koren, & Adam M. Phillippy. (2022). Long-read mapping to repetitive reference sequences using Winnowmap2. Nature Methods. 19(6). 705–710. 116 indexed citations

14.

Jain, Chirag, Neda Tavakoli, & Srinivas Aluru. (2021). A variant selection framework for genome graphs. Bioinformatics. 37(Supplement_1). i460–i467. 6 indexed citations

15.

Jain, Chirag, Arang Rhie, Haowen Zhang, et al.. (2020). Weighted minimizer sampling improves long read mapping. Bioinformatics. 36(Supplement_1). i111–i118. 107 indexed citations

16.

Dilthey, Alexander, Chirag Jain, Sergey Koren, & Adam M. Phillippy. (2019). Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps. Nature Communications. 10(1). 3066–3066. 99 indexed citations

17.

Jain, Chirag, Sergey Koren, Alexander Dilthey, Adam M. Phillippy, & Srinivas Aluru. (2018). A fast adaptive algorithm for computing whole-genome homology maps. Bioinformatics. 34(17). i748–i756. 85 indexed citations

18.

Jain, Chirag, Luis M. Rodriguez‐R, Adam M. Phillippy, Konstantinos T. Konstantinidis, & Srinivas Aluru. (2018). High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries. Nature Communications. 9(1). 5114–5114. 3074 indexed citations breakdown →

19.

Jain, Chirag, et al.. (2017). Production Ready Chatbots: Generate if not Retrieve. arXiv (Cornell University). 739–745. 4 indexed citations

20.

Jain, Chirag, et al.. (2017). A novel approach for medical assistance using trained chatbot. 243–246. 73 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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