Alla Mikheenko

9.3k total citations · 2 hit papers
18 papers, 2.0k citations indexed

About

Alla Mikheenko is a scholar working on Molecular Biology, Pharmacology and Microbiology. According to data from OpenAlex, Alla Mikheenko has authored 18 papers receiving a total of 2.0k indexed citations (citations by other indexed papers that have themselves been cited), including 16 papers in Molecular Biology, 4 papers in Pharmacology and 3 papers in Microbiology. Recurrent topics in Alla Mikheenko's work include Genomics and Phylogenetic Studies (13 papers), RNA and protein synthesis mechanisms (7 papers) and Microbial Natural Products and Biosynthesis (4 papers). Alla Mikheenko is often cited by papers focused on Genomics and Phylogenetic Studies (13 papers), RNA and protein synthesis mechanisms (7 papers) and Microbial Natural Products and Biosynthesis (4 papers). Alla Mikheenko collaborates with scholars based in Russia, United States and United Kingdom. Alla Mikheenko's co-authors include Alexey Gurevich, Vladislav Saveliev, Andrey D. Prjibelski, Dmitry Antipov, Pavel A. Pevzner, Hosein Mohimani, Pieter C. Dorrestein, Louis‐Félix Nothias, Anton Korobeynikov and Alexander Shlemov and has published in prestigious journals such as Nucleic Acids Research, Nature Communications and Nature Biotechnology.

In The Last Decade

Alla Mikheenko

17 papers receiving 2.0k citations

Hit Papers

Versatile genome assembly evaluation with QUAST-LG 2015 2026 2018 2022 2018 2015 250 500 750
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. Versatile genome assembly evaluation with QUAST-LG
    2018 804 citations Alla Mikheenko, Andrey D. Prjibelski et al. Bioinformatics profile →
  2. MetaQUAST: evaluation of metagenome assemblies
    2015 393 citations Alla Mikheenko, Vladislav Saveliev et al. Bioinformatics profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Alla Mikheenko Russia 13 1.3k 521 421 304 171 18 2.0k
Cameron L. M. Gilchrist Australia 16 1.5k 1.1× 516 1.0× 410 1.0× 489 1.6× 179 1.0× 23 2.5k
Zhongbin Shi China 6 1.6k 1.2× 544 1.0× 652 1.5× 133 0.4× 305 1.8× 8 2.2k
Wubin Qian China 10 1.7k 1.3× 558 1.1× 687 1.6× 130 0.4× 351 2.1× 19 2.5k
Anna Ratner United States 14 2.0k 1.5× 1.4k 2.8× 441 1.0× 240 0.8× 176 1.0× 14 2.9k
Mathias C. Walter Germany 14 1.2k 0.9× 512 1.0× 434 1.0× 116 0.4× 209 1.2× 37 2.1k
Marc G. Chevrette United States 20 1.4k 1.1× 404 0.8× 439 1.0× 994 3.3× 132 0.8× 42 2.3k
L.C. Reimer Germany 9 1.2k 0.9× 571 1.1× 329 0.8× 111 0.4× 58 0.3× 17 1.8k
Chunxu Song Netherlands 20 976 0.7× 325 0.6× 684 1.6× 274 0.9× 106 0.6× 37 1.9k
T. B. K. Reddy United States 20 1.6k 1.2× 1.1k 2.1× 588 1.4× 149 0.5× 136 0.8× 90 2.5k

Countries citing papers authored by Alla Mikheenko

Since Specialization
Citations

This map shows the geographic impact of Alla Mikheenko's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Alla Mikheenko with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Alla Mikheenko more than expected).

Fields of papers citing papers by Alla Mikheenko

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Alla Mikheenko. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Alla Mikheenko. The network helps show where Alla Mikheenko may publish in the future.

Co-authorship network of co-authors of Alla Mikheenko

This figure shows the co-authorship network connecting the top 25 collaborators of Alla Mikheenko. A scholar is included among the top collaborators of Alla Mikheenko based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Alla Mikheenko. Alla Mikheenko is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

18 of 18 papers shown
1.
Mikheenko, Alla, Nicholas L. Johnson, Ziyi Li, et al.. (2025). Altered mRNA transport and local translation in i3Neurons with RNA-binding protein knockdown. Nucleic Acids Research. 53(14). 1 indexed citations
2.
Prjibelski, Andrey D., Alla Mikheenko, Anoushka Joglekar, et al.. (2023). Accurate isoform discovery with IsoQuant using long reads. Nature Biotechnology. 41(7). 915–918. 81 indexed citations
3.
Mikheenko, Alla, Vladislav Saveliev, Pascal Hirsch, & Alexey Gurevich. (2023). WebQUAST: online evaluation of genome assemblies. Nucleic Acids Research. 51(W1). W601–W606. 13 indexed citations
4.
Cartney, Ann M. Mc, Kishwar Shafin, Michael Alonge, et al.. (2022). Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies. Nature Methods. 19(6). 687–695. 54 indexed citations
5.
Mikheenko, Alla, Andrey D. Prjibelski, Anoushka Joglekar, & Hagen Tilgner. (2022). Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns. Genome Research. 32(4). 726–737. 21 indexed citations
6.
Bzikadze, Andrey V., Alla Mikheenko, & Pavel A. Pevzner. (2022). Fast and accurate mapping of long reads to complete genome assemblies with VerityMap. Genome Research. 32(11-12). 2107–2118. 9 indexed citations
7.
Kunyavskaya, Olga, Alla Mikheenko, & Alexey Gurevich. (2022). NPvis: An Interactive Visualizer of Peptidic Natural Product–MS/MS Matches. Metabolites. 12(8). 706–706. 3 indexed citations
8.
Mikheenko, Alla, Andrey V. Bzikadze, Alexey Gurevich, Karen H. Miga, & Pavel A. Pevzner. (2020). TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats. Bioinformatics. 36(Supplement_1). i75–i83. 31 indexed citations
9.
Prjibelski, Andrey D., Giuseppe Diego Puglia, Dmitry Antipov, et al.. (2020). Extending rnaSPAdes functionality for hybrid transcriptome assembly. BMC Bioinformatics. 21(S12). 302–302. 22 indexed citations
10.
Mikheenko, Alla & Mikhail Kolmogorov. (2019). Assembly Graph Browser: interactive visualization of assembly graphs. Bioinformatics. 35(18). 3476–3478. 13 indexed citations
11.
Mohimani, Hosein, Alexey Gurevich, Alexander Shlemov, et al.. (2018). Dereplication of microbial metabolites through database search of mass spectra. Nature Communications. 9(1). 4035–4035. 233 indexed citations
12.
Gurevich, Alexey, Alla Mikheenko, Alexander Shlemov, et al.. (2018). Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra. Nature Microbiology. 3(3). 319–327. 77 indexed citations
13.
Mikheenko, Alla, Andrey D. Prjibelski, Vladislav Saveliev, Dmitry Antipov, & Alexey Gurevich. (2018). Versatile genome assembly evaluation with QUAST-LG. Bioinformatics. 34(13). i142–i150. 804 indexed citations breakdown →
14.
Mohimani, Hosein, Alexey Gurevich, Alla Mikheenko, et al.. (2016). Dereplication of peptidic natural products through database search of mass spectra. Nature Chemical Biology. 13(1). 30–37. 180 indexed citations
15.
Mikheenko, Alla, et al.. (2016). Icarus: visualizer for de novo assembly evaluation. Bioinformatics. 32(21). 3321–3323. 85 indexed citations
16.
Mikheenko, Alla, et al.. (2015). Effects of CAP-regimen Chemotherapy on Blood Redox Status in Patients with Ovarian Cancer. Anti-Cancer Agents in Medicinal Chemistry. 15(9). 1141–1147.
17.
Mikheenko, Alla, Vladislav Saveliev, & Alexey Gurevich. (2015). MetaQUAST: evaluation of metagenome assemblies. Bioinformatics. 32(7). 1088–1090. 393 indexed citations breakdown →
18.
Filaretov, Vladimir, et al.. (2012). A circuit synthesis technique based on network determinant expansion. 293–296. 8 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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