Atul J. Butte

65.2k total citations · 17 hit papers
338 papers, 29.2k citations indexed

About

Atul J. Butte is a scholar working on Molecular Biology, Genetics and Artificial Intelligence. According to data from OpenAlex, Atul J. Butte has authored 338 papers receiving a total of 29.2k indexed citations (citations by other indexed papers that have themselves been cited), including 165 papers in Molecular Biology, 65 papers in Genetics and 35 papers in Artificial Intelligence. Recurrent topics in Atul J. Butte's work include Bioinformatics and Genomic Networks (58 papers), Gene expression and cancer classification (47 papers) and Genetic Associations and Epidemiology (31 papers). Atul J. Butte is often cited by papers focused on Bioinformatics and Genomic Networks (58 papers), Gene expression and cancer classification (47 papers) and Genetic Associations and Epidemiology (31 papers). Atul J. Butte collaborates with scholars based in United States, Japan and United Kingdom. Atul J. Butte's co-authors include Dvir Aran, Isaac S. Kohane, Zicheng Hu, Marina Sirota, Joel T. Dudley, Purvesh Khatri, Annie Chiang, Chirag J. Patel, Mallar Bhattacharya and Adam R. Abate and has published in prestigious journals such as Nature, Science and New England Journal of Medicine.

In The Last Decade

Atul J. Butte

327 papers receiving 28.7k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

xCell: digitally portraying the tissue cellular heterogeneity landscape

2017 2.7k citations Dvir Aran, Zicheng Hu et al. profile →
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage

2019 2.5k citations Dvir Aran, Agnieszka Looney et al. Nature Immunology profile →
Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role ofPGC1andNRF1

2003 1.6k citations Atul J. Butte et al. Proceedings of the National Academy of Sciences profile →
Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

2012 1.1k citations Purvesh Khatri, Atul J. Butte et al. profile →
Systematic pan-cancer analysis of tumour purity

2015 755 citations Dvir Aran, Atul J. Butte et al. Nature Communications profile →
MUTUAL INFORMATION RELEVANCE NETWORKS: FUNCTIONAL GENOMIC CLUSTERING USING PAIRWISE ENTROPY MEASUREMENTS

1999 655 citations Atul J. Butte et al. profile →
Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data

2011 575 citations Joel T. Dudley, E. Alejandro Sweet‐Cordero et al. profile →
ImmPort: disseminating data to the public for the future of immunology

2014 565 citations Sanchita Bhattacharya, Patrick Dunn et al. profile →
ImmPort, toward repurposing of open access immunological assay data for translational and clinical research

2018 504 citations Sanchita Bhattacharya, Patrick Dunn et al. Scientific Data profile →
Ethnic Differences in the Relationship Between Insulin Sensitivity and Insulin Response

2013 473 citations Atul J. Butte et al. profile →
Computational Repositioning of the Anticonvulsant Topiramate for Inflammatory Bowel Disease

2011 440 citations Joel T. Dudley, Atul J. Butte et al. profile →
A survey of current trends in computational drug repositioning

2015 415 citations Atul J. Butte et al. profile →
Comprehensive analysis of normal adjacent to tumor transcriptomes

2017 375 citations Dvir Aran, Harikrishna Paik et al. Nature Communications profile →
Assessing the potential of GPT-4 to perpetuate racial and gender biases in health care: a model evaluation study

2023 222 citations Travis Zack, Atul J. Butte et al. profile →
Ethical and regulatory challenges of large language models in medicine

2024 105 citations Atul J. Butte et al. profile →
Transforming Cardiovascular Care With Artificial Intelligence: From Discovery to Practice

2024 83 citations Atul J. Butte et al. Journal of the American College of Cardiology profile →
Inhalable Stem Cell Exosomes Promote Heart Repair After Myocardial Infarction

2024 53 citations Atul J. Butte et al. profile →

Peers

Countries citing papers authored by Atul J. Butte

Since Specialization

Citations

This map shows the geographic impact of Atul J. Butte's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Atul J. Butte with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Atul J. Butte more than expected).

Fields of papers citing papers by Atul J. Butte

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Atul J. Butte. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Atul J. Butte. The network helps show where Atul J. Butte may publish in the future.

Co-authorship network of co-authors of Atul J. Butte

This figure shows the co-authorship network connecting the top 25 collaborators of Atul J. Butte. A scholar is included among the top collaborators of Atul J. Butte based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Atul J. Butte. Atul J. Butte is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	HIV-seq reveals gene expression differences between HIV-transcribing cells from viremic and suppressed people with HIV 2026 ·Nature Communications ·(unknown), Sushama Telwatte, Xiaoyu Luo, (unknown), (unknown), Douglas Arneson, (unknown), Atul J. Butte, (unknown), (unknown), (unknown), (unknown), (unknown), (unknown)	0
2	New Threshold for Defining Mild Aortic Stenosis Derived From Velocity-Encoded MRI in 60,000 Individuals 2025 ·Journal of the American College of Cardiology ·(unknown), Joel Rämö, David Playford, Geoff Strange, (unknown), Sean J. Jurgens, Victor Nauffal, Jonathan W. Cunningham, Emily S. Lau, Atul J. Butte, Jennifer E. Ho, Jeffrey E. Olgin, Sammy Elmariah, Mark E. Lindsay, Yih‐Kai Chan, Simon Stewart, Patrick T. Ellinor, James P. Pirruccello	2
3	Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies 2025 ·Cell Genomics ·(unknown), (unknown), Michael I. Love, (unknown), (unknown), Annie Wong‐Beringer, Russell Corbett‐Detig, Mihai Dimian, Jason H. Moore, Lana X. Garmire, T. B. K. Reddy, Atul J. Butte, Mark D. Robinson, Eleazar Eskin, Malak Abedalthagafi, (unknown)	3
4	P10.06.A AGENT-BASED MODELING FOR PATIENT-CENTERED CLINICAL DECISION SUPPORT IN NEURO-ONCOLOGY 2024 ·Neuro-Oncology ·(unknown), Bo Miao, Yogesh Yadav, Jurriaan H. de Groot, (unknown), Alex Vo, Atul J. Butte, Ben F. Mitchel, David R. Raleigh, Nicholas Butowski, Ahmed M. Alaa	0
5	Enhancing emergency department charting: Using Generative Pre‐trained Transformer‐4 (GPT‐4) to identify laceration repairs 2024 ·Academic Emergency Medicine ·(unknown), Christopher Y. K. Williams, (unknown), (unknown), (unknown), Atul J. Butte, Aaron E. Kornblith	1
6	A comparative study of large language model-based zero-shot inference and task-specific supervised classification of breast cancer pathology reports 2024 ·Journal of the American Medical Informatics Association ·Madhumita Sushil, Travis Zack, (unknown), (unknown), (unknown), (unknown), (unknown), Dmytro Lituiev, Atul J. Butte	21
7	Evaluating the use of large language models to provide clinical recommendations in the Emergency Department 2024 ·Nature Communications ·Christopher Y. K. Williams, Brenda Y. Miao, Aaron E. Kornblith, Atul J. Butte	34
8	Five-year pediatric use of a digital wearable fitness device: lessons from a pilot case study 2021 ·JAMIA Open ·(unknown), Amir Bahmani, Atul J. Butte, Xiao Li, M Snyder	4
9	Opal: an implementation science tool for machine learning clinical decision support in anesthesia 2021 ·Journal of Clinical Monitoring and Computing ·Andrew Bishara, Andrew Wong, (unknown), (unknown), (unknown), (unknown), Nicholas Fong, (unknown), (unknown), (unknown), Mark J. Pletcher, Dmytro Lituiev, Dexter Hadley, Atul J. Butte	11
10	Embedding electronic health records onto a knowledge network recognizes prodromal features of multiple sclerosis and predicts diagnosis 2021 ·Journal of the American Medical Informatics Association ·Charlotte Nelson, Riley Bove, Atul J. Butte, Sergio E. Baranzini	30
11	A robust and interpretable end-to-end deep learning model for cytometry data 2020 ·Proceedings of the National Academy of Sciences ·Zicheng Hu, Alice Tang, Jaiveer Singh, Sanchita Bhattacharya, Atul J. Butte	40
12	Accuracy of medical billing data against the electronic health record in the measurement of colorectal cancer screening rates 2020 ·BMJ Open Quality ·Vivek A. Rudrapatna, Benjamin S. Glicksberg, Patrick Avila, Emily Harding‐Theobald, Connie W. Wang, Atul J. Butte	11
13	Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage breakdown → 2019 ·Nature Immunology ·Dvir Aran, Agnieszka Looney, Leqian Liu, (unknown), Valerie Fong, Austin Hsu, Suzanna Chak, Ram P. Naikawadi, Paul J. Wolters, Adam R. Abate, Atul J. Butte, Mallar Bhattacharya	2451
14	Comparing Ethnicity-Specific Reference Intervals for Clinical Laboratory Tests from EHR Data 2018 ·The Journal of Applied Laboratory Medicine ·Nadav Rappoport, Harikrishna Paik, Boris Oskotsky, Ruth Tor, Elad Ziv, Noah Zaitlen, Atul J. Butte	24
15	ImmPort, toward repurposing of open access immunological assay data for translational and clinical research breakdown → 2018 ·Scientific Data ·Sanchita Bhattacharya, Patrick Dunn, Cristel G. Thomas, Barry Smith, Henry Schaefer, Jieming Chen, Zicheng Hu, Kelly A. Zalocusky, Ravi Shankar, Shai S. Shen-Orr, Elizabeth Thomson, Jeffrey A. Wiser, Atul J. Butte	504
16	A Meta-analysis of Lung Cancer Gene Expression Identifies PTK7 as a Survival Gene in Lung Adenocarcinoma 2014 ·Cancer Research ·Chen Ron, Purvesh Khatri, Paweł K. Mazur, Melanie Polin, Yanyan Zheng, Dedeepya Vaka, Chuong D. Hoang, Joseph B. Shrager, Yue Xu, Silvestre Vicent, Atul J. Butte, E. Alejandro Sweet‐Cordero	116
17	A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors 2013 ·Cancer Discovery ·Nadine S. Jahchan, Joel T. Dudley, Paweł K. Mazur, Natasha Flores, Dian Yang, (unknown), Anne‐Flore Zmoos, Dedeepya Vaka, Kim Q.T. Tran, Margaret Zhou, Karolina Krasinska, Jonathan W. Riess, Joel W. Neal, Purvesh Khatri, (unknown), Atul J. Butte, Julien Sage	275
18	Systematic identification of DNA variants associated with ultraviolet radiation using a novel Geographic-Wide Association Study (GeoWAS) 2013 ·BMC Medical Genetics ·(unknown), Rong Chen, Aditya Ramesh, Erik Corona, Hyunseok P. Kang, David Ruau, Atul J. Butte	2
19	Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo 2012 ·Cancer Research ·Silvestre Vicent, Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Chen Ron, Yanyan Zheng, Anna K. Gillespie, Nicole Clarke, Yue Xu, Joseph B. Shrager, Chuong D. Hoang, Sylvia K. Plevritis, Atul J. Butte, E. Alejandro Sweet‐Cordero	102
20	Relationship of differential gene expression profiles in CD34+ myelodysplastic syndrome marrow cells to disease subtype and progression 2009 ·Blood ·Kunju Sridhar, Douglas T. Ross, Robert Tibshirani, Atul J. Butte, Peter L. Greenberg	54

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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