Asa Ben‐Hur

12.9k citations

79 papers · 7.0k indexed · 4 hit papers · h-index 37

Impact in

Artificial Intelligence top 0.5%
- Advanced Clustering Algorithms Research
Molecular Biology top 2%
- Bioinformatics and Genomic Networks
- Machine Learning in Bioinformatics
- RNA and protein synthesis mechanisms
- RNA Research and Splicing
- Genomics and Phylogenetic Studies
- RNA modifications and cancer

Papers in

Computational Theory and Mathematics 16
- Computational Drug Discovery Methods 10
Molecular Biology 59
- Bioinformatics and Genomic Networks 19
- RNA Research and Splicing 19
- Machine Learning in Bioinformatics 18
- RNA modifications and cancer 17
- RNA and protein synthesis mechanisms 16
- Protein Structure and Dynamics 10
- Gene expression and cancer classification 9

Co-authors: William Stafford Noble Jason Weston Hava T. Siegelmann D. Horn Vladimir Vapnik Isabelle Guyon Anireddy S. N. Reddy André Elisseeff
Journals: Bioinformatics (7 papers)BMC Bioinformatics (4 papers)Genome biology (3 papers)Nucleic Acids Research (3 papers)Proceedings of the National Academy of Sciences (3 papers)
Partner nations: United States Israel United Kingdom

In The Last Decade

Asa Ben‐Hur

78 papers receiving 6.8k citations

Hit Papers

align trajectories log scale

A survey of the sorghum transcriptome using single-molecule long reads 2016 · 395 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2016 Nature Communications
2009 Methods in molecular biology
2008 PLoS Computational Biology
2002 Journal of Machine Learning Research

Peers

Replace Yvan Saeys with:

Yvan Saeys Belgium

Jean‐Philippe Vert France

Lifeng Wang China

Tao Jiang United States

Vasant Honavar United States

Charles Elkan United States

Ping Luo China

Karsten Borgwardt Germany

Olga G. Troyanskaya United States

Sungroh Yoon South Korea

Asa Ben‐Hur relative to Yvan Saeys Belgium Yvan Saeys's profile →

Citations per field

00.5×1.5×

Yvan Saeys · 1×

×0.8 2k/2k

AI

×0.4 3k/9k

MB

×0.9 878/1k

CVPR

×1.0 573/553

CTM

×1.2 290/236

SP

Citations per year

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Countries citing papers authored by Asa Ben‐Hur

Since Specialization

Citations

This map shows the geographic impact of Asa Ben‐Hur's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Asa Ben‐Hur with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Asa Ben‐Hur more than expected).

Fields of papers citing papers by Asa Ben‐Hur

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Asa Ben‐Hur. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Asa Ben‐Hur. The network helps show where Asa Ben‐Hur may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Asa Ben‐Hur, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Asa Ben‐Hur Line = papers co-authored together Asa Ben‐Hur links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	Cross-linking breast tumor transcriptomic states and tissue histology Cell Reports Medicine ·李燕奇, Julián Fernández Boccazzi, Mostafa Jahanifar, Lawrence S. Young, Asa Ben‐Hur, Kim Branson, J. Louise Jones, Nasir Rajpoot, Fayyaz Minhas	2023	2
2	Phenotyping and predicting wheat spike characteristics using image analysis and machine learning SHILAP Revista de lepidopterología ·Tim W. Johnson, Natalie Cooper, Asa Ben‐Hur, Siti Amarwati, XL雷啸霖 Lei, Richard E. Mason	2023	3
3	Protein quality assessment with a loss function designed for high-quality decoys SHILAP Revista de lepidopterología ·砂塚亘, Asa Ben‐Hur	2023	1
4	On the choice of negative examples for prediction of host-pathogen protein interactions SHILAP Revista de lepidopterología ·Eduard Feihn, 砂塚亘, Fayyaz Minhas, Asa Ben‐Hur	2022	0
5	A self-attention model for inferring cooperativity between regulatory features Nucleic Acids Research ·Marcella D Torres, Asa Ben‐Hur	2021	26
6	Extended Archaeal Histone-Based Chromatin Structure Regulates Global Gene Expression in Thermococcus kodakarensis Frontiers in Microbiology ·和也北, Marcella D Torres, 朝見祐也, Brett W. Burkhart, Wu Qilin, Stephen Zenas, Andrew F. Gardner, Asa Ben‐Hur, Thomas J. Santangelo	2021	16
7	aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events PLoS ONE ·Sreemoyee Chatterjee, Jaime Ruiz, Daniel B. Sloan, Asa Ben‐Hur, Christina Boucher	2016	13
8	Combining heterogeneous data sources for accurate functional annotation of proteins BMC Bioinformatics ·Artem Sokolov, M. P. da Silva, Kiley Graim, Karin Verspoor, Asa Ben‐Hur	2013	48
9	Identification of an intronic splicing regulatory element involved in auto‐regulation of alternative splicing of SCL33 pre‐mRNA The Plant Journal ·Julie A. Thomas, Saiprasad G. Palusa, Kasavajhala V. S. K. Prasad, Gul Shad Ali, Giridara‐Kumar Surabhi, Asa Ben‐Hur, Salah E. Abdel‐Ghany, Anireddy S. N. Reddy	2012	62
10	Support Vector Machines and Kernels for Computational Biology PLoS Computational Biology ·Asa Ben‐Hur, Cheng Soon Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch Hit paper breakdown →	2008	501
11	Choosing negative examples for the prediction of protein-protein interactions BMC Bioinformatics ·Asa Ben‐Hur, William Stafford Noble	2006	177
12	Large-scale identification of yeast integral membrane protein interactions Proceedings of the National Academy of Sciences ·John P. Miller, Russell S. Lo, Asa Ben‐Hur, 俊太大和, Igor Štagljar, William Stafford Noble, Stanley Fields	2005	202
13	Result Analysis of the NIPS 2003 Feature Selection Challenge ePrints Soton (University of Southampton) ·Isabelle Guyon, Steve Gunn, Asa Ben‐Hur, Gideon Dror	2004	293
14	Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale Neural Information Processing Systems ·Haidong Wang, Eran Segal, Asa Ben‐Hur, Daphne Koller, Douglas L. Brutlag	2004	14
15	CREME: a framework for identifying cis-regulatory modulesin human-mouse conserved segments Bioinformatics ·Roded Sharan, Ivan Ovcharenko, Asa Ben‐Hur, Richard M. Karp	2003	81
16	Support vector clustering Journal of Machine Learning Research ·Asa Ben‐Hur, D. Horn, Hava T. Siegelmann, Vladimir Vapnik Hit paper breakdown →	2002	911
17	A stability based method for discovering structure in clustered data PubMed ·Asa Ben‐Hur, André Elisseeff, Isabelle Guyon	2001	364
18	A Support Vector Method for Clustering ScholarWorks@UMassAmherst (University of Massachusetts Amherst) ·Asa Ben‐Hur, D. Horn, Hava T. Siegelmann, Vladimir Vapnik	2000	31
19	Noisy Neural Networks and Generalizations Neural Information Processing Systems ·Hava T. Siegelmann, Stephanie Torres, Asa Ben‐Hur	1999	5
20	A Theory of Complexity for Continuous Time Dynamics. Hava T. Siegelmann, Asa Ben‐Hur, Shmuel Fishman	1998	2

About Asa Ben‐Hur

Asa Ben‐Hur is a scholar working on Computational Theory and Mathematics, Molecular Biology, Artificial Intelligence, Neurology and Computer Vision and Pattern Recognition, having authored 79 papers that have together received 7.0k indexed citations. Recurring topics across this work include Bioinformatics and Genomic Networks (19 papers), RNA Research and Splicing (19 papers), Machine Learning in Bioinformatics (18 papers), RNA modifications and cancer (17 papers), RNA and protein synthesis mechanisms (16 papers), Protein Structure and Dynamics (10 papers), Computational Drug Discovery Methods (10 papers) and Gene expression and cancer classification (9 papers). The work is most often cited by research in Artificial Intelligence (1.7k citations), Molecular Biology (3.4k citations), Computer Vision and Pattern Recognition (878 citations), Computational Theory and Mathematics (573 citations) and Signal Processing (290 citations). Asa Ben‐Hur has collaborated with scholars based in United States, Israel and United Kingdom. Frequent co-authors include William Stafford Noble, Jason Weston, Hava T. Siegelmann, D. Horn, Vladimir Vapnik, Isabelle Guyon, Anireddy S. N. Reddy, André Elisseeff, Michael Hamilton and Cheng Soon Ong. Their work appears in journals such as Bioinformatics, BMC Bioinformatics, Genome biology, Nucleic Acids Research and Proceedings of the National Academy of Sciences.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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