Jean‐Philippe Vert

18.9k total citations · 5 hit papers
120 papers, 9.6k citations indexed

About

Jean‐Philippe Vert is a scholar working on Molecular Biology, Artificial Intelligence and Computational Theory and Mathematics. According to data from OpenAlex, Jean‐Philippe Vert has authored 120 papers receiving a total of 9.6k indexed citations (citations by other indexed papers that have themselves been cited), including 91 papers in Molecular Biology, 16 papers in Artificial Intelligence and 14 papers in Computational Theory and Mathematics. Recurrent topics in Jean‐Philippe Vert's work include Gene expression and cancer classification (25 papers), Bioinformatics and Genomic Networks (23 papers) and Machine Learning in Bioinformatics (22 papers). Jean‐Philippe Vert is often cited by papers focused on Gene expression and cancer classification (25 papers), Bioinformatics and Genomic Networks (23 papers) and Machine Learning in Bioinformatics (22 papers). Jean‐Philippe Vert collaborates with scholars based in France, United States and Japan. Jean‐Philippe Vert's co-authors include Laurent Jacob, Fantine Mordelet, Emmanuel Barillot, Nelle Varoquaux, Guillaume Obozinski, Nicolas Servant, Édith Heard, Eric Viara, Job Dekker and Bryan R. Lajoie and has published in prestigious journals such as Nucleic Acids Research, Nature Communications and Journal of Clinical Oncology.

In The Last Decade

Jean‐Philippe Vert

117 papers receiving 9.4k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

2015 1.4k citations Jean‐Philippe Vert et al. profile →
Kernel Methods in Computational Biology

2004 675 citations Jean‐Philippe Vert et al. profile →
Group lasso with overlap and graph lasso

2009 509 citations Jean‐Philippe Vert et al. profile →
A general and flexible method for signal extraction from single-cell RNA-seq data

2018 402 citations Jean‐Philippe Vert et al. profile →
Consistency of random forests

2015 315 citations Erwan Scornet, Jean‐Philippe Vert et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Jean‐Philippe Vert France	48	6.0k	1.7k	1.1k	995	903	120	9.6k
Hiroaki Kitano Japan	52	8.7k 1.5×	1.6k 1.0×	1.5k 1.4×	955 1.0×	588 0.7×	285	15.6k
Kazuyuki Aihara Japan	61	4.0k 0.7×	4.8k 2.8×	936 0.8×	729 0.7×	418 0.5×	815	17.5k
Donna K. Slonim United States	27	10.5k 1.7×	2.4k 1.4×	622 0.5×	1.2k 1.2×	245 0.3×	68	13.8k
Eduardo D. Sontag United States	77	7.6k 1.3×	2.7k 1.6×	3.3k 2.9×	924 0.9×	262 0.3×	472	32.3k
Naama Barkai Israel	52	12.4k 2.1×	1.3k 0.8×	410 0.4×	676 0.7×	1.3k 1.5×	157	14.7k
Bing Wang China	54	5.4k 0.9×	832 0.5×	935 0.8×	1.2k 1.2×	1.3k 1.4×	680	13.5k
Tao Jiang United States	49	5.2k 0.9×	2.1k 1.2×	2.1k 1.8×	956 1.0×	1.2k 1.3×	433	10.4k
Xin Gao Saudi Arabia	56	5.9k 1.0×	1.5k 0.9×	930 0.8×	782 0.8×	485 0.5×	550	12.0k
Gunnar Rätsch Germany	52	5.1k 0.8×	4.9k 2.9×	653 0.6×	4.6k 4.6×	1.9k 2.1×	167	16.1k
Olga G. Troyanskaya United States	54	11.3k 1.9×	1.3k 0.8×	593 0.5×	419 0.4×	538 0.6×	153	15.8k

Countries citing papers authored by Jean‐Philippe Vert

Since Specialization

Citations

This map shows the geographic impact of Jean‐Philippe Vert's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jean‐Philippe Vert with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jean‐Philippe Vert more than expected).

Fields of papers citing papers by Jean‐Philippe Vert

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jean‐Philippe Vert. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jean‐Philippe Vert. The network helps show where Jean‐Philippe Vert may publish in the future.

Co-authorship network of co-authors of Jean‐Philippe Vert

This figure shows the co-authorship network connecting the top 25 collaborators of Jean‐Philippe Vert. A scholar is included among the top collaborators of Jean‐Philippe Vert based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jean‐Philippe Vert. Jean‐Philippe Vert is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Meng-Papaxanthos, Laetitia, Ran Zhang, Gang Li, et al.. (2023). LSMMD-MA: scaling multimodal data integration for single-cell genomics data analysis. Bioinformatics. 39(7). 1 indexed citations

Blondel, Mathieu, Arthur Mensch, & Jean‐Philippe Vert. (2021). Differentiable Divergences Between Time Series. International Conference on Artificial Intelligence and Statistics. 3853–3861. 3 indexed citations

Vert, Jean‐Philippe, et al.. (2020). Gene regulation inference from single-cell RNA-seq data with linear differential equations and velocity inference. Bioinformatics. 36(18). 4774–4780. 68 indexed citations

Cook, Kate B., et al.. (2020). Measuring significant changes in chromatin conformation with ACCOST. Nucleic Acids Research. 48(5). 2303–2311. 12 indexed citations

Berthet, Quentin, Mathieu Blondel, Olivier Teboul, et al.. (2020). Learning with Differentiable Pertubed Optimizers. Neural Information Processing Systems. 33. 9508–9519. 20 indexed citations

Liu, Jie, Yuanhao Huang, Ritambhara Singh, Jean‐Philippe Vert, & William Stafford Noble. (2019). Jointly Embedding Multiple Single-Cell Omics Measurements. HAL (Le Centre pour la Communication Scientifique Directe). 10 indexed citations

Cuturi, Marco, Olivier Teboul, & Jean‐Philippe Vert. (2019). Differentiable Ranking and Sorting using Optimal Transport. Neural Information Processing Systems. 32. 6858–6868. 20 indexed citations

Zinovyev, Andreï, et al.. (2017). NetNorM: Capturing cancer-relevant information in somatic exome mutation data with gene networks for cancer stratification and prognosis. PLoS Computational Biology. 13(6). e1005573–e1005573. 23 indexed citations

Plouhinec, Jean-Louis, Sofía Medina-Ruiz, Caroline Borday, et al.. (2017). A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates. PLoS Biology. 15(10). e2004045–e2004045. 43 indexed citations

10.

Bernard, Elsa, et al.. (2017). Kernel Multitask Regression for Toxicogenetics. Molecular Informatics. 36(10). 4 indexed citations

11.

Vert, Jean‐Philippe, et al.. (2010). On learning with kernels for unordered pairs. International Conference on Machine Learning. 463–470. 12 indexed citations

12.

Cuturi, Marco, Jean‐Philippe Vert, & Alexandre d’Aspremont. (2009). White Functionals for Anomaly Detection in Dynamical Systems. Neural Information Processing Systems. 22. 432–440. 1 indexed citations

13.

Mahé, Pierre & Jean‐Philippe Vert. (2009). Virtual Screening with Support Vector Machines and Structure Kernels. Combinatorial Chemistry & High Throughput Screening. 12(4). 409–423. 10 indexed citations

14.

Vert, Jean‐Philippe, et al.. (2006). Consistency and Convergence Rates of One-Class SVMs and Related Algorithms. Journal of Machine Learning Research. 7(29). 817–854. 84 indexed citations

15.

Vert, Jean‐Philippe, et al.. (2005). Consistency of one-class SVM and related algorithms. Neural Information Processing Systems. 18. 1409–1416. 3 indexed citations

16.

Cuturi, Marco, Kenji Fukumizu, & Jean‐Philippe Vert. (2005). Semigroup Kernels on Measures. Journal of Machine Learning Research. 6(40). 1169–1198. 33 indexed citations

17.

Cuturi, Marco & Jean‐Philippe Vert. (2004). Semigroup Kernels on Finite Sets. Neural Information Processing Systems. 17. 329–336. 10 indexed citations

18.

Vert, Jean‐Philippe & Yoshihiro Yamanishi. (2004). Supervised Graph Inference. Neural Information Processing Systems. 17. 1433–1440. 53 indexed citations

19.

Vert, Jean‐Philippe & Minoru Kanehisa. (2002). Graph-Driven Feature Extraction From Microarray Data Using Diffusion Kernels and Kernel CCA. Neural Information Processing Systems. 15. 1425–1432. 56 indexed citations

20.

Saigo, Hiroto, Jean‐Philippe Vert, Tatsuya Akutsu, & Nobuhisa Ueda. (2002). Comparison of SVM-Based Methods for Remote Homology Detection. Proceedings Genome Informatics Workshop/Genome informatics. 13(13). 396–397. 4 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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