Andrea Amadei

9.8k total citations · 1 hit paper
190 papers, 8.2k citations indexed

About

Andrea Amadei is a scholar working on Molecular Biology, Atomic and Molecular Physics, and Optics and Physical and Theoretical Chemistry. According to data from OpenAlex, Andrea Amadei has authored 190 papers receiving a total of 8.2k indexed citations (citations by other indexed papers that have themselves been cited), including 99 papers in Molecular Biology, 91 papers in Atomic and Molecular Physics, and Optics and 45 papers in Physical and Theoretical Chemistry. Recurrent topics in Andrea Amadei's work include Spectroscopy and Quantum Chemical Studies (87 papers), Protein Structure and Dynamics (68 papers) and Photochemistry and Electron Transfer Studies (33 papers). Andrea Amadei is often cited by papers focused on Spectroscopy and Quantum Chemical Studies (87 papers), Protein Structure and Dynamics (68 papers) and Photochemistry and Electron Transfer Studies (33 papers). Andrea Amadei collaborates with scholars based in Italy, Netherlands and Germany. Andrea Amadei's co-authors include Herman J. C. Berendsen, Alfredo Di Nola, Massimiliano Aschi, Isabella Daidone, Daan M. F. van Aalten, H. J. C. Berendsen, Marco D’Abramo, Bert L. de Groot, Marc A. Ceruso and J. B. C. Findlay and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Journal of the American Chemical Society and Nucleic Acids Research.

In The Last Decade

Andrea Amadei

187 papers receiving 8.1k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Essential dynamics of proteins

1993 2.9k citations Andrea Amadei, Herman J. C. Berendsen et al. Proteins Structure Function and Bioinformatics profile →

Peers

Countries citing papers authored by Andrea Amadei

Since Specialization

Citations

This map shows the geographic impact of Andrea Amadei's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Andrea Amadei with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Andrea Amadei more than expected).

Fields of papers citing papers by Andrea Amadei

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Andrea Amadei. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Andrea Amadei. The network helps show where Andrea Amadei may publish in the future.

Co-authorship network of co-authors of Andrea Amadei

This figure shows the co-authorship network connecting the top 25 collaborators of Andrea Amadei. A scholar is included among the top collaborators of Andrea Amadei based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Andrea Amadei. Andrea Amadei is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Modeling the temperature dependence of the fluorescence properties of Indole in aqueous solution 2024 ·Spectrochimica Acta Part A Molecular and Biomolecular Spectroscopy ·(unknown), Andrea Amadei, Marco D’Abramo	0
2	Modelling Complex Bimolecular Reactions in a Condensed Phase: The Case of Phosphodiester Hydrolysis 2023 ·Molecules ·(unknown), (unknown), Andrea Amadei, Riccardo Salvio, Marco D’Abramo	4
3	Theoretical–Computational Modeling of CD Spectra of Aqueous Monosaccharides by Means of Molecular Dynamics Simulations and Perturbed Matrix Method 2023 ·Molecules ·Massimiliano Aschi, Laura Palombi, Andrea Amadei	0
4	Criteria Used to Review Weighting Methods As Part of the UN Environment Life Cycle Initiative's Global Guidance on Environmental Life Cycle Impact Assessment Indicators (GLAM) Project 2022 ·Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU) ·Marco Cinelli, (unknown), Cecilia Askham, Andrea Amadei, (unknown), Till M. Bachmann, (unknown), Anders Bjørn, (unknown), Alexis Laurent, Masaharu Motoshita, (unknown), Serenella Sala, João Santos, Laura Scherer, Bengt Steen, Ryosuke Yokoi	1
5	On the nature of solvatochromic effect: The riboflavin absorption spectrum as a case study 2017 ·Spectrochimica Acta Part A Molecular and Biomolecular Spectroscopy ·Isabella Daidone, Andrea Amadei, Massimiliano Aschi, Laura Zanetti‐Polzi	8
6	Molecular mechanisms of activation in CDK2 2013 ·Journal of Biomolecular Structure and Dynamics ·Neva Bešker, Andrea Amadei, Marco D’Abramo	13
7	A general theoretical model for electron transfer reactions in complex systems 2011 ·Physical Chemistry Chemical Physics ·Andrea Amadei, Isabella Daidone, Massimiliano Aschi	31
8	Effects of local electric fields on the redox free energy of single stranded DNA 2010 ·Chemical Communications ·Marco D’Abramo, Modesto Orozco, Andrea Amadei	9
9	Theoretical modeling of the valence UV spectra of 1,2,3-triazine and uracil in solution 2006 ·Physical Chemistry Chemical Physics ·Costantino Zazza, Andrea Amadei, Nico Sanna, A. Grandi, Giovanni Chillemi, Alfredo Di Nola, Marco D’Abramo, Massimiliano Aschi	34
10	Molecular Dynamics Simulation of Sperm Whale Myoglobin: Effects of Mutations and Trapped CO on the Structure and Dynamics of Cavities 2005 ·Biophysical Journal ·Cecilia Bossa, Andrea Amadei, Isabella Daidone, Massimiliano Anselmi, Beatrice Vallone, Maurizio Brunori, Alfredo Di Nola	87
11	Characterization of the conformational behavior of peptide Contryphan Vn: A theoretical study 2004 ·Biopolymers ·M. D’Alessandro, Maurizio Paci, Andrea Amadei	8
12	Molecular Dynamics Simulation of Protein Folding by Essential Dynamics Sampling: Folding Landscape of Horse Heart Cytochrome c 2003 ·Biophysical Journal ·Isabella Daidone, Andrea Amadei, Danilo Roccatano, Alfredo Di Nola	56
13	Structural rearrangements of the two domains of Azotobacter vinelandii rhodanese upon sulfane sulfur release: essential molecular dynamics, NMR relaxation and deuterium exchange on the uniformly labeled protein 2003 ·International Journal of Biological Macromolecules ·Daniel O. Cicero, Sonia Melino, Maria Vittoria Orsale, Giuseppe Brancato, Andrea Amadei, Fabio Forlani, Silvia Pagani, Maurizio Paci	6
14	A molecular dynamics study of the 41‐56 β‐hairpin from B1 domain of protein G 1999 ·Protein Science ·Danilo Roccatano, Andrea Amadei, Alfredo Di Nola, Herman J. C. Berendsen	97
15	Domain motions in bacteriophage T4 lysozyme: A comparison between molecular dynamics and crystallographic data 1998 ·Proteins Structure Function and Bioinformatics ·C.P.G.M. de Groot, Steven Hayward, Daan M. F. van Aalten, Andrea Amadei, H. J. C. Berendsen	149
16	Prediction of protein conformational freedom from distance constraints 1997 ·Proteins Structure Function and Bioinformatics ·Bert L. de Groot, Daan M. F. van Aalten, Ruud M. Scheek, Andrea Amadei, Gert Vriend, H. J. C. Berendsen	216
17	The essential dynamics of Cu, Zn superoxide dismutase: suggestion of intersubunit communication 1997 ·Biophysical Journal ·Giovanni Chillemi, Mattia Falconi, Andrea Amadei, Giovanna Zimatore, Alessandro Desideri, Alfredo Di Nola	44
18	Protein dynamics derived from clusters of crystal structures 1997 ·Biophysical Journal ·Daan M. F. van Aalten, (unknown), Bert L. de Groot, Herman J. C. Berendsen, J. B. C. Findlay, Andrea Amadei	74
19	A comparison of structural and dynamic properties of different simulation methods applied to SH3 1996 ·Biophysical Journal ·Daan M. F. van Aalten, Andrea Amadei, R. P. Bywater, J. B. C. Findlay, Herman J. C. Berendsen, Chris Sander, Pieter F. W. Stouten	43
20	Essential dynamics of proteins breakdown → 1993 ·Proteins Structure Function and Bioinformatics ·Andrea Amadei, (unknown), Herman J. C. Berendsen	2865

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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