Agnes Noy

2.8k total citations · 1 hit paper
33 papers, 1.9k citations indexed

About

Agnes Noy is a scholar working on Molecular Biology, Ecology and Atomic and Molecular Physics, and Optics. According to data from OpenAlex, Agnes Noy has authored 33 papers receiving a total of 1.9k indexed citations (citations by other indexed papers that have themselves been cited), including 31 papers in Molecular Biology, 13 papers in Ecology and 6 papers in Atomic and Molecular Physics, and Optics. Recurrent topics in Agnes Noy's work include DNA and Nucleic Acid Chemistry (27 papers), RNA and protein synthesis mechanisms (18 papers) and Bacteriophages and microbial interactions (13 papers). Agnes Noy is often cited by papers focused on DNA and Nucleic Acid Chemistry (27 papers), RNA and protein synthesis mechanisms (18 papers) and Bacteriophages and microbial interactions (13 papers). Agnes Noy collaborates with scholars based in United Kingdom, Spain and United States. Agnes Noy's co-authors include Modesto Orozco, Alberto Pérez, F. Javier Luque, Sarah A. Harris, Charles A. Laughton, Carlos González, Ignacio Faustino, Michele Vendruscolo, Federica Battistini and Iván Ivani and has published in prestigious journals such as Journal of the American Chemical Society, Physical Review Letters and Chemical Society Reviews.

In The Last Decade

Agnes Noy

32 papers receiving 1.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Parmbsc1: a refined force field for DNA simulations

2015 822 citations Iván Ivani, Pablo D. Dans et al. Nature Methods profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Agnes Noy United Kingdom	19	1.7k	315	165	158	142	33	1.9k
Ignacio Faustino Spain	12	1.3k 0.8×	170 0.5×	212 1.3×	122 0.8×	77 0.5×	20	1.5k
Timothy J. Wilson United Kingdom	31	2.3k 1.3×	190 0.6×	174 1.1×	209 1.3×	227 1.6×	76	2.8k
Nad’a Špačková Czechia	25	2.3k 1.3×	279 0.9×	167 1.0×	80 0.5×	78 0.5×	38	2.4k
Marie Zgarbová Czechia	24	3.3k 1.9×	475 1.5×	280 1.7×	138 0.9×	171 1.2×	37	3.5k
Filip Lankaš Czechia	28	2.9k 1.7×	638 2.0×	163 1.0×	211 1.3×	131 0.9×	52	3.1k
Michiko Kimoto Japan	34	3.1k 1.8×	276 0.9×	145 0.9×	267 1.7×	173 1.2×	80	3.2k
Ryan Marshall United States	20	1.7k 1.0×	187 0.6×	108 0.7×	250 1.6×	304 2.1×	28	2.1k
Harold D. Kim United States	17	1.8k 1.0×	148 0.5×	119 0.7×	176 1.1×	266 1.9×	37	2.1k
Miroslav Krepl Czechia	22	1.7k 1.0×	204 0.6×	107 0.6×	52 0.3×	86 0.6×	55	1.8k
Jen Hsin United States	21	1.1k 0.7×	206 0.7×	204 1.2×	91 0.6×	306 2.2×	31	1.6k

Countries citing papers authored by Agnes Noy

Since Specialization

Citations

This map shows the geographic impact of Agnes Noy's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Agnes Noy with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Agnes Noy more than expected).

Fields of papers citing papers by Agnes Noy

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Agnes Noy. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Agnes Noy. The network helps show where Agnes Noy may publish in the future.

Co-authorship network of co-authors of Agnes Noy

This figure shows the co-authorship network connecting the top 25 collaborators of Agnes Noy. A scholar is included among the top collaborators of Agnes Noy based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Agnes Noy. Agnes Noy is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Noy, Agnes, et al.. (2025). Atomic Description of the Reciprocal Action between Supercoils and Melting Bubbles on Linear DNA. Physical Review Letters. 134(3). 38403–38403. 1 indexed citations

Leake, Mark C., et al.. (2025). HU Searches and Binds Specific DNA via a Multistep Process Combining Weak Electrostatic Binding, Protein Reorientation, and DNA Flexibility. JACS Au. 5(10). 4870–4878.

Shepherd, Jack W, Zhaokun Zhou, Jamieson A. L. Howard, et al.. (2024). Correlating fluorescence microscopy, optical and magnetic tweezers to study single chiral biopolymers such as DNA. Nature Communications. 15(1). 2748–2748. 6 indexed citations

Noy, Agnes, et al.. (2024). The impact of sequence periodicity on DNA mechanics: investigating the origin of A-tract's curvature. Nanoscale. 16(39). 18410–18420. 3 indexed citations

Noy, Agnes, et al.. (2022). Atomistic Molecular Dynamics Simulations of DNA in Complex 3D Arrangements for Comparison with Lower Resolution Structural Experiments. Methods in molecular biology. 2476. 95–109. 1 indexed citations

Leake, Mark C., et al.. (2022). Structural interplay between DNA-shape protein recognition and supercoiling: The case of IHF. Computational and Structural Biotechnology Journal. 20. 5264–5274. 14 indexed citations

Backer, Adam S., Graeme A. King, Andreas S. Biebricher, et al.. (2021). Elucidating the Role of Topological Constraint on the Structure of Overstretched DNA Using Fluorescence Polarization Microscopy. The Journal of Physical Chemistry B. 125(30). 8351–8361. 3 indexed citations

Pyne, Alice L. B., Agnes Noy, Michael M. Piperakis, et al.. (2021). Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides. Nature Communications. 12(1). 1053–1053. 90 indexed citations

Jalal, Adam S. B., Ngat T. Tran, Clare E. M. Stevenson, et al.. (2020). Diversification of DNA-Binding Specificity by Permissive and Specificity-Switching Mutations in the ParB/Noc Protein Family. Cell Reports. 32(3). 107928–107928. 25 indexed citations

10.

Noy, Agnes, Anthony Maxwell, & Sarah A. Harris. (2017). Interference between Triplex and Protein Binding to Distal Sites on Supercoiled DNA. Biophysical Journal. 112(3). 523–531. 5 indexed citations

11.

Sutthibutpong, Thana, Christian Matek, Craig J. Benham, et al.. (2016). Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation. Nucleic Acids Research. 44(19). gkw815–gkw815. 43 indexed citations

12.

Noy, Agnes, Thana Sutthibutpong, & Sarah A. Harris. (2016). Protein/DNA interactions in complex DNA topologies: expect the unexpected. Biophysical Reviews. 8(S1). 145–155. 11 indexed citations

13.

Sutthibutpong, Thana, Agnes Noy, & Sarah A. Harris. (2016). Atomistic Molecular Dynamics Simulations of DNA Minicircle Topoisomers: A Practical Guide to Setup, Performance, and Analysis. Methods in molecular biology. 1431. 195–219. 3 indexed citations

14.

Ivani, Iván, Pablo D. Dans, Agnes Noy, et al.. (2015). Parmbsc1: a refined force field for DNA simulations. Nature Methods. 13(1). 55–58. 822 indexed citations breakdown →

15.

Noy, Agnes, Ignacio Soteras, F. Javier Luque, & Modesto Orozco. (2009). The impact of monovalent ion force field model in nucleic acids simulations. Physical Chemistry Chemical Physics. 11(45). 10596–10596. 55 indexed citations

16.

Orozco, Modesto, Agnes Noy, & Alberto Pérez. (2008). Recent advances in the study of nucleic acid flexibility by molecular dynamics. Current Opinion in Structural Biology. 18(2). 185–193. 96 indexed citations

17.

Noy, Agnes, Tim Meyer, Manuel Rueda, et al.. (2006). Data Mining of Molecular Dynamics Trajectories of Nucleic Acids. Journal of Biomolecular Structure and Dynamics. 23(4). 447–455. 12 indexed citations

18.

Noy, Agnes, Alberto Pérez, Manuel Márquez, F. Javier Luque, & Modesto Orozco. (2005). Structure, Recognition Properties, and Flexibility of the DNA·RNA Hybrid. Journal of the American Chemical Society. 127(13). 4910–4920. 62 indexed citations

19.

Pérez, Alberto, Agnes Noy, Filip Lankaš, F. Javier Luque, & Modesto Orozco. (2004). The relative flexibility of B-DNA and A-RNA duplexes: database analysis. Nucleic Acids Research. 32(20). 6144–6151. 118 indexed citations

20.

Orozco, Modesto, Alberto Pérez, Agnes Noy, & F. Javier Luque. (2003). Theoretical methods for the simulation of nucleic acids. Chemical Society Reviews. 32(6). 350–364. 138 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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