Yoichiro Shibata

4.6k citations

36 papers · 3.0k indexed · 1 hit paper · h-index 24

Co-authors: Brian D. Strahl Bhargavi Rao Jason D. Lieb Cheol‐Koo Lee Hana Hall Tiaojiang Xiao Gregory E. Crawford Arno L. Greenleaf
Topics: Genomics and Chromatin Dynamics (16 papers)Epigenetics and DNA Methylation (7 papers)Cancer-related gene regulation (7 papers)
Cited by: Molecular Biology Aging Immunology
Journals: Proceedings of the National Academy of Sciences Journal of Biological Chemistry Nature Genetics
Partner nations: United States Japan France

In The Last Decade

Yoichiro Shibata

35 papers receiving 2.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Evidence for nucleosome depletion at active regulatory regions genome-wide

2004 576 citations Cheol‐Koo Lee, Yoichiro Shibata et al. Nature Genetics profile →

Peers

Countries citing papers authored by Yoichiro Shibata

Since Specialization

Citations

This map shows the geographic impact of Yoichiro Shibata's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Yoichiro Shibata with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Yoichiro Shibata more than expected).

Fields of papers citing papers by Yoichiro Shibata

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Yoichiro Shibata. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Yoichiro Shibata. The network helps show where Yoichiro Shibata may publish in the future.

Co-authorship network of co-authors of Yoichiro Shibata

This figure shows the co-authorship network connecting the top 25 collaborators of Yoichiro Shibata. A scholar is included among the top collaborators of Yoichiro Shibata based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Yoichiro Shibata. Yoichiro Shibata is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	The Immunogenomic Landscape of Peripheral High-Dose IL-2 Pharmacodynamics in Patients with Metastatic Renal Cell Carcinoma: A Benchmark for Next-Generation IL-2–Based Immunotherapies 2024 ·The Journal of Immunology ·(unknown),Joel R. Eisner,Yuelong Guo,Yoichiro Shibata,James M. Davison,(unknown),Carol Farhangfar,Farhang Farhangfar,Jill M. Mooney,Michael V. Milburn,Richard L. White,Asim Amin,Marcos E. Milla,David Foureau	2
2	Association of Antifolate Response Signature Status and Clinical Activity of Pemetrexed-Platinum Chemotherapy in Non–Small Cell Lung Cancer: The Piedmont Study 2023 ·Clinical Cancer Research ·Joel R. Eisner,Gregory M. Mayhew,James M. Davison,(unknown),Yoichiro Shibata,Yuelong Guo,Carol Farhangfar,Farhang Farhangfar,Joshua M. Uronis,Jeffrey M. Conroy,Michael V. Milburn,D. Neil Hayes,Kathryn F. Mileham	0
3	Distinct Predictive Immunogenomic Profiles of Response to Immune Checkpoint Inhibitors and IL2: A Real-world Evidence Study of Patients with Advanced Renal Cancer 2022 ·Cancer Research Communications ·Joel R. Eisner,(unknown),Gregory M. Mayhew,Yoichiro Shibata,Yuelong Guo,Carol Farhangfar,Farhang Farhangfar,Joshua M. Uronis,Jill M. Mooney,Michael V. Milburn,David Foureau,Richard L. White,Asim Amin,Marcos E. Milla	1
4	Fibroblast growth factor receptor 3 alterations and response to immune checkpoint inhibition in metastatic urothelial cancer: a real world experience 2021 ·British Journal of Cancer ·Tracy L. Rose,William H. Weir,Gregory M. Mayhew,Yoichiro Shibata,Patrick Eulitt,Joshua M. Uronis,Mi Zhou,Matthew E. Nielsen,Angela B. Smith,Michael Woods,Michele C. Hayward,Ashley H. Salazar,Matthew I. Milowsky,Sara E. Wobker,Katrina McGinty,(unknown),Joel R. Eisner,William Y. Kim	108
5	Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach 2019 ·Genome Biology and Evolution ·Lee Edsall,Alejandro Berrío,William H. Majoros,Devjanee Swain-Lenz,(unknown),Yoichiro Shibata,Alexias Safi,Gregory A. Wray,Gregory E. Crawford,Andrew S. Allen	9
6	Mammalian SWI/SNF collaborates with a polycomb-associated protein to regulate male germline transcription in the mouse 2019 ·Development ·Debashish U. Menon,Yoichiro Shibata,Weipeng Mu,Terry Magnuson	33
7	IL-1R signaling promotes STAT3 and NF-κB factor recruitment to distal cis-regulatory elements that regulate Il17a/f transcription 2018 ·Journal of Biological Chemistry ·Sarah K. Whitley,Anand Balasubramani,Carlene L. Zindl,Ranjan Sen,Yoichiro Shibata,Gregory E. Crawford,Nathaniel M. Weathington,Robin D. Hatton,Casey T. Weaver	40
8	Microgravity induces proteomics changes involved in endoplasmic reticulum stress and mitochondrial protection 2016 ·Scientific Reports ·(unknown),J. Will Thompson,Laura G. Dubois,Reddy Peera Kommaddi,Matthew W. Foster,Rajashree Mishra,Sudha K. Shenoy,Yoichiro Shibata,Yared H. Kidane,M. Arthur Moseley,Lisa S. Carnell,Dawn E. Bowles	47
9	Histone H3.3 maintains genome integrity during mammalian development 2015 ·Genes & Development ·Chuan-Wei Jang,Yoichiro Shibata,Joshua Starmer,Della Yee,Terry Magnuson	135
10	Deletion of a Conserved cis-Element in the Ifng Locus Highlights the Role of Acute Histone Acetylation in Modulating Inducible Gene Transcription 2014 ·PLoS Genetics ·Anand Balasubramani,Colleen J. Winstead,Henrietta Turner,Karen M. Janowski,Stacey N. Harbour,Yoichiro Shibata,Gregory E. Crawford,Robin D. Hatton,Casey T. Weaver	23
11	Extensive Evolutionary Changes in Regulatory Element Activity during Human Origins Are Associated with Altered Gene Expression and Positive Selection 2012 ·PLoS Genetics ·Yoichiro Shibata,Nathan C. Sheffield,Olivier Fédrigo,Courtney C. Babbitt,Matthew Wortham,Alok K. Tewari,Darin London,Lingyun Song,Bum-Kyu Lee,Vishwanath R. Iyer,Stephen C.J. Parker,Elliott H. Margulies,Gregory A. Wray,Terrence S. Furey,Gregory E. Crawford	90
12	Epigenetic Instability of Cytokine and Transcription Factor Gene Loci Underlies Plasticity of the T Helper 17 Cell Lineage 2010 ·Immunity ·Ryuta Mukasa,Anand Balasubramani,Yun Kyung Lee,Sarah K. Whitley,(unknown),Yoichiro Shibata,Gregory E. Crawford,Robin D. Hatton,Casey T. Weaver	223
13	Modular Utilization of Distal cis-Regulatory Elements Controls Ifng Gene Expression in T Cells Activated by Distinct Stimuli 2010 ·Immunity ·Anand Balasubramani,Yoichiro Shibata,Gregory E. Crawford,Albert S. Baldwin,Robin D. Hatton,Casey T. Weaver	69
14	Mapping Regulatory Elements by DNaseI Hypersensitivity Chip (DNase-Chip) 2009 ·Methods in molecular biology ·Yoichiro Shibata,Gregory E. Crawford	16
15	The histone methylase Set2p and the histone deacetylase Rpd3p repress meiotic recombination at the HIS4 meiotic recombination hotspot in Saccharomyces cerevisiae 2008 ·DNA repair ·Jason D. Merker,Margaret Dominska,Patricia W. Greenwell,(unknown),David C. Bouck,Yoichiro Shibata,Brian D. Strahl,Piotr A. Mieczkowski,Thomas D. Petes	38
16	The RNA Polymerase II Kinase Ctk1 Regulates Positioning of a 5′ Histone Methylation Boundary along Genes 2006 ·Molecular and Cellular Biology ·Tiaojiang Xiao,Yoichiro Shibata,Bhargavi Rao,R. Nicholas Laribee,(unknown),Michael Buck,Jack Greenblatt,Nevan J. Krogan,Jason D. Lieb,Brian D. Strahl	46
17	A Novel Domain in Set2 Mediates RNA Polymerase II Interaction and Couples Histone H3 K36 Methylation with Transcript Elongation 2005 ·Molecular and Cellular Biology ·(unknown),Hemali Phatnani,Yoichiro Shibata,Hana Hall,Arno L. Greenleaf,Brian D. Strahl	383
18	BUR Kinase Selectively Regulates H3 K4 Trimethylation and H2B Ubiquitylation through Recruitment of the PAF Elongation Complex 2005 ·Current Biology ·R. Nicholas Laribee,Nevan J. Krogan,Tiaojiang Xiao,Yoichiro Shibata,Timothy R. Hughes,Jack Greenblatt,Brian D. Strahl	139
19	Evidence for nucleosome depletion at active regulatory regions genome-widebreakdown → 2004 ·Nature Genetics ·Cheol‐Koo Lee,Yoichiro Shibata,Bhargavi Rao,Brian D. Strahl,Jason D. Lieb	576
20	Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast 2003 ·Genes & Development ·Tiaojiang Xiao,Hana Hall,(unknown),Yoichiro Shibata,Mark C. Hall,Christoph H. Borchers,Brian D. Strahl	346

About Yoichiro Shibata

Yoichiro Shibata is a scholar working on Aging, Molecular Biology and Cancer Research, having authored 36 papers that have together received 3.0k indexed citations. Recurring topics across this work include Genomics and Chromatin Dynamics (16 papers), Epigenetics and DNA Methylation (7 papers) and Cancer-related gene regulation (7 papers). The work is most often cited by research in Molecular Biology (2.4k citations), Aging (54 citations) and Immunology (417 citations). Yoichiro Shibata has collaborated with scholars based in United States, Japan and France. Frequent co-authors include Brian D. Strahl, Bhargavi Rao, Jason D. Lieb, Cheol‐Koo Lee, Hana Hall, Tiaojiang Xiao, Gregory E. Crawford, Arno L. Greenleaf, Hemali Phatnani and Mark C. Hall. Their work appears in journals such as Proceedings of the National Academy of Sciences, Journal of Biological Chemistry and Nature Genetics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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