Viktor Horn̆ák

11.0k citations

48 papers · 8.6k indexed · 1 hit paper · h-index 29

Impact in

Molecular Biology top 0.5%
- Protein Structure and Dynamics
- RNA and protein synthesis mechanisms
- DNA and Nucleic Acid Chemistry
- Receptor Mechanisms and Signaling
Virology top 2%

Papers in

Virology 4
Molecular Biology 40
- Protein Structure and Dynamics 20
- DNA and Nucleic Acid Chemistry 9
- Receptor Mechanisms and Signaling 8

Co-authors: Carlos Simmerling Asim Okur Robert Abel Adrián E. Roitberg Steven O. Smith Robert C. Rizzo Callum J. Dickson Markus Eilers
Journals: Journal of Chemical Information and Modeling (6 papers)The Journal of Physical Chemistry B (5 papers)Journal of Molecular Biology (5 papers)Journal of the American Chemical Society (4 papers)Journal of Chemical Theory and Computation (4 papers)
Partner nations: United States United Kingdom Switzerland

In The Last Decade

Viktor Horn̆ák

48 papers receiving 8.6k citations

Hit Papers

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Comparison of multiple Amber force fields and development of improved protein backbone parameters 2006 · 5.9k citations

Peers

Countries citing papers authored by Viktor Horn̆ák

Since Specialization

Citations

This map shows the geographic impact of Viktor Horn̆ák's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Viktor Horn̆ák with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Viktor Horn̆ák more than expected).

Fields of papers citing papers by Viktor Horn̆ák

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Viktor Horn̆ák. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Viktor Horn̆ák. The network helps show where Viktor Horn̆ák may publish in the future.

Co-authors

The 25 scholars most cited alongside Viktor Horn̆ák, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Viktor Horn̆ák Line = papers co-authored together Viktor Horn̆ák links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	CovCysPredictor: Predicting Selective Covalently Modifiable Cysteines Using Protein Structure and Interpretable Machine Learning Journal of Chemical Information and Modeling ·Sergio MIgliore, Ernest Awoonor‐Williams, Andrei A. Golosov, Viktor Horn̆ák	2025	3
2	Benchmarking In Silico Tools for Cysteine p K _a Prediction Journal of Chemical Information and Modeling ·Ernest Awoonor‐Williams, Andrei A. Golosov, Viktor Horn̆ák	2023	17
3	Hidden bias in the DUD-E dataset leads to misleading performance of deep learning in structure-based virtual screening PLoS ONE ·Lieyang Chen, Anthony Cruz, Steven Ramsey, Callum J. Dickson, José S. Duca, Viktor Horn̆ák, David Ryan Koes, Tom Kurtzman	2019	169
4	Using Membrane Partitioning Simulations To Predict Permeability of Forty-Nine Drug-Like Molecules Journal of Chemical Information and Modeling ·Callum J. Dickson, Viktor Horn̆ák, Dallas Bednarczyk, José S. Duca	2018	28
5	Contributions of the membrane dipole potential to the function of voltage-gated cation channels and modulation by small molecule potentiators Biochimica et Biophysica Acta (BBA) - Biomembranes ·Robert A. Pearlstein, Callum J. Dickson, Viktor Horn̆ák	2016	29
6	Structure–activity relationship of cytochrome bc1 reductase inhibitor broad spectrum antifungal ilicicolin H Bioorganic & Medicinal Chemistry Letters ·Sheo B. Singh, Weiguo Liu, Xiaohua Li, Tom Chen, Ali Shafiee, Sarah Dreikorn, Viktor Horn̆ák, María Meinz, Janet C. Onishi	2013	25
7	Helix movement is coupled to displacement of the second extracellular loop in rhodopsin activation Nature Structural & Molecular Biology ·Shivani Ahuja, Viktor Horn̆ák, Elsa C. Y. Yan, Natalie Syrett, Karine dos Santos Andrade, Amiram Hirshfeld, Martine Ziliox, Thomas P. Sakmar, Mordechai Sheves, Philip J. Reeves, Steven O. Smith, Markus Eilers	2009	179
8	Location of the Retinal Chromophore in the Activated State of Rhodopsin Journal of Biological Chemistry ·Shivani Ahuja, Evan Crocker, Markus Eilers, Viktor Horn̆ák, Amiram Hirshfeld, Martine Ziliox, Natalie Syrett, Philip J. Reeves, H. Gobind Khorana, Mordechai Sheves, Steven O. Smith	2009	74
9	Molecular mechanics parameters for the FapydG DNA lesion Journal of Computational Chemistry ·Kun Song, Viktor Horn̆ák, Carlos de los Santos, Arthur P. Grollman, Carlos Simmerling	2007	10
10	Reconciling the Solution and X-ray Structures of the Villin Headpiece Helical Subdomain: Molecular Dynamics Simulations and Double Mutant Cycles Reveal a Stabilizing Cation−π Interaction Biochemistry ·Lauren Wickstrom, Sungho Lee, Viktor Horn̆ák, Daniel P. Raleigh, Carlos Simmerling	2007	24
11	Structure of a Transient Intermediate for GTP Hydrolysis by Ras Structure ·Bradley Ford, Viktor Horn̆ák, Céline Boutrous Saab, Nicolas Nassar	2006	47
12	The Unfolded State of the Villin Headpiece Helical Subdomain: Computational Studies of the Role of Locally Stabilized Structure Journal of Molecular Biology ·Lauren Wickstrom, Asim Okur, Kun Song, Viktor Horn̆ák, Daniel P. Raleigh, Carlos Simmerling	2006	45
13	Comparison of multiple Amber force fields and development of improved protein backbone parameters Proteins Structure Function and Bioinformatics ·Viktor Horn̆ák, Robert Abel, Asim Okur, Will Coward, Adrián E. Roitberg, Carlos Simmerling Hit paper breakdown →	2006	5874
14	Folding Cooperativity in a Three-stranded β-Sheet Model Journal of Molecular Biology ·Daniel R. Roe, Viktor Horn̆ák, Carlos Simmerling	2005	34
15	Dynamic Behavior of DNA Base Pairs Containing 8-Oxoguanine Journal of the American Chemical Society ·Xiaolin Cheng, Carlos Eduardo Perufo, Viktor Horn̆ák, Carlos de los Santos, Arthur P. Grollman, Carlos Simmerling	2005	68
16	Comparison of Class A and D G Protein-Coupled Receptors: Common Features in Structure and Activation Biochemistry ·Markus Eilers, Viktor Horn̆ák, Steven O. Smith, James B. Konopka	2005	67
17	Development of softcore potential functions for overcoming steric barriers in molecular dynamics simulations Journal of Molecular Graphics and Modelling ·Viktor Horn̆ák, Carlos Simmerling	2004	30
18	Generation of accurate protein loop conformations through low‐barrier molecular dynamics Proteins Structure Function and Bioinformatics ·Viktor Horn̆ák, Carlos Simmerling	2003	47
19	Using PC clusters to evaluate the transferability of molecular mechanics force fields for proteins Journal of Computational Chemistry ·Asim Okur, Will Coward, Viktor Horn̆ák, Carlos Simmerling	2002	85
20	Crystallographic Structure of the K Intermediate of Bacteriorhodopsin: Conservation of Free Energy after Photoisomerization of the Retinal Journal of Molecular Biology ·Brigitte Schobert, Jill R. Cupp‐Vickery, Viktor Horn̆ák, Steven O. Smith, Janos K. Lanyi	2002	180

About Viktor Horn̆ák

Viktor Horn̆ák is a scholar working on Virology, Molecular Biology, Computational Theory and Mathematics, Cellular and Molecular Neuroscience and Spectroscopy, having authored 48 papers that have together received 8.6k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (20 papers), DNA and Nucleic Acid Chemistry (9 papers), Enzyme Structure and Function (9 papers), Receptor Mechanisms and Signaling (8 papers), Computational Drug Discovery Methods (7 papers), Photoreceptor and optogenetics research (6 papers), Spectroscopy and Quantum Chemical Studies (6 papers) and Mass Spectrometry Techniques and Applications (5 papers). The work is most often cited by research in Molecular Biology (6.7k citations), Virology (374 citations), Computational Theory and Mathematics (1.1k citations), Spectroscopy (964 citations) and Cellular and Molecular Neuroscience (863 citations). Viktor Horn̆ák has collaborated with scholars based in United States, United Kingdom and Switzerland. Frequent co-authors include Carlos Simmerling, Asim Okur, Robert Abel, Adrián E. Roitberg, Steven O. Smith, Robert C. Rizzo, Callum J. Dickson, Markus Eilers, José S. Duca and Lauren Wickstrom. Their work appears in journals such as Journal of Chemical Information and Modeling, The Journal of Physical Chemistry B, Journal of Molecular Biology, Journal of the American Chemical Society and Journal of Chemical Theory and Computation.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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