Ulf Ryde

23.1k total citations · 2 hit papers
315 papers, 18.6k citations indexed

About

Ulf Ryde is a scholar working on Molecular Biology, Materials Chemistry and Renewable Energy, Sustainability and the Environment. According to data from OpenAlex, Ulf Ryde has authored 315 papers receiving a total of 18.6k indexed citations (citations by other indexed papers that have themselves been cited), including 162 papers in Molecular Biology, 92 papers in Materials Chemistry and 83 papers in Renewable Energy, Sustainability and the Environment. Recurrent topics in Ulf Ryde's work include Protein Structure and Dynamics (74 papers), Metalloenzymes and iron-sulfur proteins (72 papers) and Metal-Catalyzed Oxygenation Mechanisms (71 papers). Ulf Ryde is often cited by papers focused on Protein Structure and Dynamics (74 papers), Metalloenzymes and iron-sulfur proteins (72 papers) and Metal-Catalyzed Oxygenation Mechanisms (71 papers). Ulf Ryde collaborates with scholars based in Sweden, China and Denmark. Ulf Ryde's co-authors include Samuel Genheden, Pär Söderhjelm, Kasper P. Jensen, Emma Sigfridsson, Mats H. M. Olsson, Björn O. Roos, Lili Cao, Patrik Rydberg, Lihong Hu and Thomas H. Rod and has published in prestigious journals such as Chemical Reviews, Proceedings of the National Academy of Sciences and Journal of the American Chemical Society.

In The Last Decade

Ulf Ryde

306 papers receiving 18.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The MM/PBSA and MM/GBSA methods to estimate ligand-binding affinities

2015 3.6k citations Ulf Ryde et al. profile →
MOLCAS: a program package for computational chemistry

2003 1.6k citations Ulf Ryde et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Ulf Ryde Sweden	69	9.2k	4.5k	3.4k	2.9k	2.6k	315	18.6k
Stephen G. Sligar United States	89	19.0k 2.1×	4.1k 0.9×	6.3k 1.9×	2.9k 1.0×	1.6k 0.6×	385	31.9k
J. Deisenhofer United States	72	19.4k 2.1×	4.4k 1.0×	1.1k 0.3×	3.0k 1.0×	913 0.3×	134	27.5k
David N. Beratan United States	66	5.2k 0.6×	4.3k 1.0×	1.9k 0.6×	4.6k 1.6×	529 0.2×	271	16.9k
Julian Tirado‐Rives United States	46	12.9k 1.4×	7.5k 1.7×	1.1k 0.3×	6.1k 2.1×	3.3k 1.3×	100	31.2k
Thomas F. Koetzle United States	48	7.6k 0.8×	5.1k 1.1×	3.3k 1.0×	1.4k 0.5×	892 0.3×	137	16.4k
Barry D. Olafson United States	10	10.2k 1.1×	6.0k 1.3×	1.9k 0.6×	3.1k 1.0×	1.3k 0.5×	13	19.3k
Geoffrey Hutchison United States	32	6.9k 0.7×	4.3k 1.0×	748 0.2×	1.2k 0.4×	4.7k 1.8×	75	20.4k
Jan H. Jensen Denmark	49	10.7k 1.2×	8.0k 1.8×	3.1k 0.9×	11.0k 3.7×	2.2k 0.8×	155	34.6k
Wendy D. Cornell United States	19	13.1k 1.4×	4.6k 1.0×	743 0.2×	3.9k 1.3×	2.2k 0.8×	36	21.8k
Ursula Röthlisberger Switzerland	69	3.9k 0.4×	9.2k 2.0×	1.3k 0.4×	5.7k 1.9×	369 0.1×	320	21.8k

Countries citing papers authored by Ulf Ryde

Since Specialization

Citations

This map shows the geographic impact of Ulf Ryde's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ulf Ryde with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ulf Ryde more than expected).

Fields of papers citing papers by Ulf Ryde

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ulf Ryde. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ulf Ryde. The network helps show where Ulf Ryde may publish in the future.

Co-authorship network of co-authors of Ulf Ryde

This figure shows the co-authorship network connecting the top 25 collaborators of Ulf Ryde. A scholar is included among the top collaborators of Ulf Ryde based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Ulf Ryde. Ulf Ryde is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Oláh, Julianna, et al.. (2025). Computational Evidence for a Water-Assisted Proton-Transfer Mechanism in Uronate Isomerase from Bacillus Halodurans (Bh0493). The Journal of Physical Chemistry B. 129(49). 12675–12684.

Ryde, Ulf, et al.. (2024). Investigating the Substrate Oxidation Mechanism in Lytic Polysaccharide Monooxygenase: H ₂ O ₂ - versus O ₂ -Activation. Inorganic Chemistry. 63(46). 21929–21940. 5 indexed citations

Lundgren, Kristina, Octav Caldararu, Esko Oksanen, & Ulf Ryde. (2024). Quantum refinement in real and reciprocal space using the Phenix and ORCA software. IUCrJ. 11(6). 921–937. 2 indexed citations

Jiang, Hao & Ulf Ryde. (2024). Putative reaction mechanism of nitrogenase with a half-dissociated S2B ligand. Dalton Transactions. 53(27). 11500–11513. 2 indexed citations

Wang, Meiting, Wenfeng Lu, Ulf Ryde, et al.. (2024). Unraveling the Binding Mode of Cyclic Adenosine–Inosine Monophosphate (cAIMP) to STING through Molecular Dynamics Simulations. Molecules. 29(11). 2650–2650.

Drenckhahn, Detlev, Thomas Gregor, R. Haveman, et al.. (2023). (2963) Proposal to reject the name Rubus pseudoidaeus (Rosaceae). Taxon. 72(3). 672–673.

Tiberti, Matteo, et al.. (2023). Comparison of force fields to study the zinc-finger containing protein NPL4, a target for disulfiram in cancer therapy. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics. 1871(4). 140921–140921. 3 indexed citations

Jiang, Hao & Ulf Ryde. (2023). H₂ formation from the E₂–E₄ states of nitrogenase. Physical Chemistry Chemical Physics. 26(2). 1364–1375. 2 indexed citations

Vysotskiy, Victor P., Hao Jiang, Ernst D. Larsson, et al.. (2023). Assessment of DFT functionals for a minimal nitrogenase [Fe(SH)4H]− model employing state-of-the-art ab initio methods. The Journal of Chemical Physics. 159(4). 6 indexed citations

10.

Zhai, Huanchen, Seunghoon Lee, Zhi‐Hao Cui, et al.. (2023). Multireference Protonation Energetics of a Dimeric Model of Nitrogenase Iron–Sulfur Clusters. The Journal of Physical Chemistry A. 127(47). 9974–9984. 4 indexed citations

11.

Ryde, Ulf, et al.. (2023). Catalytic Reaction Mechanism of Glyoxalase II: A Quantum Mechanics/Molecular Mechanics Study. The Journal of Physical Chemistry B. 127(20). 4480–4495. 6 indexed citations

12.

Ignjatović, Majda Misini, Octav Caldararu, Kristoffer Peterson, et al.. (2021). Entropy–Entropy Compensation between the Protein, Ligand, and Solvent Degrees of Freedom Fine-Tunes Affinity in Ligand Binding to Galectin-3C. SHILAP Revista de lepidopterología. 1(4). 484–500. 28 indexed citations

13.

Caldararu, Octav, Matthew P. Blakeley, Nicolas Coquelle, et al.. (2021). Neutron structures of Leishmania mexicana triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps. IUCrJ. 8(4). 633–643. 8 indexed citations

14.

Stenström, Olof, Majda Misini Ignjatović, Octav Caldararu, et al.. (2019). Interplay between Conformational Entropy and Solvation Entropy in Protein–Ligand Binding. Journal of the American Chemical Society. 141(5). 2012–2026. 102 indexed citations

15.

Ryde, Ulf, et al.. (2018). ニトロゲナーゼにおける破れた対称性とスピン状態に対する蛋白質とDFT法の影響【JST・京大機械翻訳】. International Journal of Quantum Chemistry. 118(15). 1. 2 indexed citations

16.

Ryde, Ulf. (2016). QM/MM Calculations on Proteins. Methods in enzymology on CD-ROM/Methods in enzymology. 119–158. 73 indexed citations

17.

Ryde, Ulf. (2009). Rubus sect. Corylifolii in the province of Halland, SW Sweden. Lund University Publications (Lund University). 103(6). 279–300. 2 indexed citations

18.

Hersleth, H.-P., Takeshi Uchida, Åsmund K. Røhr, et al.. (2005). Structure of the intermediates in the myoglobin-peroxide reaction. Acta Crystallographica Section A Foundations of Crystallography. 61(a1). c214–c214. 1 indexed citations

19.

Nilsson, Kristina & Ulf Ryde. (2004). Protonation status of metal-bound ligands can be determined by quantum refinement. Journal of Inorganic Biochemistry. 98(9). 1539–1546. 43 indexed citations

20.

Ryde, Ulf. (1996). The coordination of the catalytic zinc ion in alcohol dehydrogenase studied by combined quantum-chemical and molecular mechanics calculations. Journal of Computer-Aided Molecular Design. 10(2). 153–164. 178 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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