Tzong-Yi Lee

9.4k citations

119 papers · 4.9k indexed · 2 hit papers · h-index 40

Impact in

Microbiology top 0.5%
- Antimicrobial Peptides and Activities
Molecular Biology top 2%
- Machine Learning in Bioinformatics
- Genomics and Phylogenetic Studies
- RNA and protein synthesis mechanisms
- vaccines and immunoinformatics approaches
- Ubiquitin and proteasome pathways

Papers in

Microbiology 17
- Antimicrobial Peptides and Activities 17
Clinical Biochemistry 12
- Bacterial Identification and Susceptibility Testing 12

Co-authors: Kai‐Yao Huang Hsien‐Da Huang Wen‐Chi Chang Cheng-Tsung Lu Jhih-Hua Jhong Justin Bo‐Kai Hsu Min-Gang Su Tzu‐Hao Chang
Journals: BMC Bioinformatics (16 papers)Nucleic Acids Research (11 papers)International Journal of Molecular Sciences (10 papers)Briefings in Bioinformatics (9 papers)PLoS ONE (8 papers)
Partner nations: Taiwan China United States

In The Last Decade

Tzong-Yi Lee

118 papers receiving 4.9k citations

Hit Papers

align trajectories log scale

Global characterization of macrophage polarization mechanisms and identification of M2-type polarization inhibitors 2021 · 207 citations

Peers

Countries citing papers authored by Tzong-Yi Lee

Since Specialization

Citations

This map shows the geographic impact of Tzong-Yi Lee's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tzong-Yi Lee with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tzong-Yi Lee more than expected).

Fields of papers citing papers by Tzong-Yi Lee

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tzong-Yi Lee. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tzong-Yi Lee. The network helps show where Tzong-Yi Lee may publish in the future.

Co-authors

The 25 scholars most cited alongside Tzong-Yi Lee, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Tzong-Yi Lee Line = papers co-authored together Tzong-Yi Lee links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work
1	KinPred-RNA—kinase activity inference and cancer type classification using machine learning on RNA-seq data iScience ·V. N. Smirnov, Lantian Yao, Chia‐Ru Chung, Yixian Huang, Shangfu Li, Wenyang Zhang, Yuxuan Pang, Tzong-Yi Lee	2024	2
2	Recent insights into breast milk microRNA: their role as functional regulators Frontiers in Nutrition ·Yiran Xu, Qiuli Lu, Hsi‐Yuan Huang, Yang-Chi-Dung Lin, Tzong-Yi Lee, Hsien‐Da Huang, Yi Yang, Yongfei Wang	2024	3
3	An ensemble deep learning model for predicting minimum inhibitory concentrations of antimicrobial peptides against pathogenic bacteria iScience ·Chia‐Ru Chung, Corine Huet, Yun Tang, Li-Ching Wu, Justin Bo‐Kai Hsu, Jang‐Jih Lu, Tzong-Yi Lee, Chen Bai, Jorng‐Tzong Horng	2024	7
4	Interpretable Multi-Scale Deep Learning for RNA Methylation Analysis across Multiple Species International Journal of Molecular Sciences ·Theodor Komann, Chia‐Ru Chung, Tzong-Yi Lee	2024	4
5	A Robust Drug–Target Interaction Prediction Framework with Capsule Network and Transfer Learning International Journal of Molecular Sciences ·Yixian Huang, Hsi‐Yuan Huang, Yi-Gang Chen, Yang-Chi-Dung Lin, Lantian Yao, Kiwamu UMEZAWA, L.P. Hariri, José Eduardo Zárate-Aranda, V. N. Smirnov, F. Naqvi, Kun Ma, Yeong-Nan Cheng, Tzong-Yi Lee, Hsien‐Da Huang	2023	14
6	Accelerating the Discovery of Anticancer Peptides through Deep Forest Architecture with Deep Graphical Representation International Journal of Molecular Sciences ·Lantian Yao, Wenshuo Li, Yuntian Zhang, Harvey Kaplan, Yuxuan Pang, Yixian Huang, Chia‐Ru Chung, Liuris Herrera, Ying‐Chih Chiang, Tzong-Yi Lee	2023	21
7	Roles of KLF4 and AMPK in the inhibition of glycolysis by pulsatile shear stress in endothelial cells Proceedings of the National Academy of Sciences ·Yue Han, Ming He, Traci Marin, Hui Shen, Wei‐Ting Wang, Tzong-Yi Lee, Hsiao-Chin Hong, Zong‐Lai Jiang, Theodore Garland, (unknown), Brendan Gongol, Shu Chien	2021	42
8	Characterization and identification of lysine crotonylation sites based on machine learning method on both plant and mammalian Scientific Reports ·Theodor Komann, Zhuo Wang, Hongfei Wang, Yuxuan Pang, Tzong-Yi Lee	2020	15
9	Incorporating Statistical Test and Machine Intelligence Into Strain Typing of Staphylococcus haemolyticus Based on Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Frontiers in Microbiology ·Chia‐Ru Chung, Hsin‐Yao Wang, 강유선, Yi‐Ju Tseng, Chun‐Hsien Chen, Tzong-Yi Lee, Feri Ariawan, Jorng‐Tzong Horng, Jang‐Jih Lu	2019	19
10	Genome-wide discovery of viral microRNAs based on phylogenetic analysis and structural evolution of various human papillomavirus subtypes Briefings in Bioinformatics ·Shun-Long Weng, Kai‐Yao Huang, Julia Weng, 泰裕仲野, Tzu‐Hao Chang, Tzong-Yi Lee	2017	17
11	A new scheme to discover functional associations and regulatory networks of E3 ubiquitin ligases BMC Systems Biology ·Kai‐Yao Huang, Julia Weng, Tzong-Yi Lee, Shun‐Long Weng	2016	5
12	UbiNet: an online resource for exploring the functional associations and regulatory networks of protein ubiquitylation Database ·Lim Hankwon, Kai‐Yao Huang, Julia Weng, K. Robert Lai, Tzong-Yi Lee	2016	21
13	dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins Nucleic Acids Research ·Kai‐Yao Huang, Min-Gang Su, Hui‐Ju Kao, 化宏源, Jhih-Hua Jhong, Peter Philps, Hsien‐Da Huang, Tzong-Yi Lee	2015	135
14	dbGSH: a database of S-glutathionylation Bioinformatics ·Yi‐Ju Chen, Cheng-Tsung Lu, Tzong-Yi Lee, Yu‐Ju Chen	2014	52
15	Incorporating substrate sequence motifs and spatial amino acid composition to identify kinase-specific phosphorylation sites on protein three-dimensional structures BMC Bioinformatics ·Min-Gang Su, Tzong-Yi Lee	2013	27
16	SNOSite: Exploiting Maximal Dependence Decomposition to Identify Cysteine S-Nitrosylation with Substrate Site Specificity PLoS ONE ·Tzong-Yi Lee, Yi‐Ju Chen, Tsung-Cheng Lu, Hsien‐Da Huang, Yu‐Ju Chen	2011	73
17	Incorporating Distant Sequence Features and Radial Basis Function Networks to Identify Ubiquitin Conjugation Sites PLoS ONE ·Tzong-Yi Lee, Shu-An Chen, Hsin‐Yi Hung, Yu‐Yen Ou	2011	84
18	Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites Journal of Computer-Aided Molecular Design ·Cheng-Tsung Lu, Shu-An Chen, Neil Arvin Bretaña, Katrin Bopper, Tzong-Yi Lee	2011	25
19	miRTar: an integrated system for identifying miRNA-target interactions in human BMC Bioinformatics ·Justin Bo‐Kai Hsu, Chih-Min Chiu, Sheng‐Da Hsu, Gianmarco Mengaldo, Chia-Hung Chien, Tzong-Yi Lee, Hsien‐Da Huang	2011	115
20	RegPhos: a system to explore the protein kinase–substrate phosphorylation network in humans Nucleic Acids Research ·Tzong-Yi Lee, Justin Bo‐Kai Hsu, Wen‐Chi Chang, Hsien‐Da Huang	2010	64

About Tzong-Yi Lee

Tzong-Yi Lee is a scholar working on Microbiology, Clinical Biochemistry, Molecular Biology, Cancer Research and Molecular Medicine, having authored 119 papers that have together received 4.9k indexed citations. Recurring topics across this work include Machine Learning in Bioinformatics (44 papers), RNA and protein synthesis mechanisms (19 papers), Antimicrobial Peptides and Activities (17 papers), Genomics and Phylogenetic Studies (15 papers), Protein Structure and Dynamics (14 papers), Bacterial Identification and Susceptibility Testing (12 papers), RNA modifications and cancer (10 papers) and Ubiquitin and proteasome pathways (9 papers). The work is most often cited by research in Microbiology (513 citations), Molecular Biology (3.7k citations), Clinical Biochemistry (220 citations), Cancer Research (377 citations) and Plant Science (860 citations). Tzong-Yi Lee has collaborated with scholars based in Taiwan, China and United States. Frequent co-authors include Kai‐Yao Huang, Hsien‐Da Huang, Wen‐Chi Chang, Cheng-Tsung Lu, Jhih-Hua Jhong, Justin Bo‐Kai Hsu, Min-Gang Su, Tzu‐Hao Chang, Chi-Nga Chow and Yi‐Ju Chen. Their work appears in journals such as BMC Bioinformatics, Nucleic Acids Research, International Journal of Molecular Sciences, Briefings in Bioinformatics and PLoS ONE.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact