Tyrone Ryba

6.3k citations

21 papers · 1.9k indexed · 1 hit paper · h-index 16

Impact in

Molecular Biology top 5%
- Genomics and Chromatin Dynamics
- DNA Repair Mechanisms
- Epigenetics and DNA Methylation
- RNA Research and Splicing
- CRISPR and Genetic Engineering
- Pluripotent Stem Cells Research
Cancer Research top 10%
- Cancer Genomics and Diagnostics

Papers in ⓘ

Molecular Biology 19
- Genomics and Chromatin Dynamics 14
- DNA Repair Mechanisms 10
- Epigenetics and DNA Methylation 9
- Pluripotent Stem Cells Research 3
- CRISPR and Genetic Engineering 2
Genetics 7
- Genomic variations and chromosomal abnormalities 4
- Genetics and Neurodevelopmental Disorders 2

Co-authors: David M. Gilbert (16 shared papers)Ichiro Hiratani (12 shared papers)Michael Kulik (3 shared papers)Stephen Dalton (3 shared papers)Junjie Lu (3 shared papers)Tomoki Yokochi (3 shared papers)Jinfeng Zhang (2 shared papers)Thomas C. Schulz (1 shared paper)
Journals: Genome Research (3 papers)Proceedings of the National Academy of Sciences (2 papers)PLoS ONE (2 papers)Human Molecular Genetics (1 paper)Frontiers in Ecology and Evolution (1 paper)
Partner nations: United States Japan Australia

In The Last Decade

Tyrone Ryba

21 papers receiving 1.9k citations

Hit Papers

align trajectories log scale

Cancer, metastasis, and the epigenome 2024 · 65 citations

Peers

Countries citing papers authored by Tyrone Ryba

Since Specialization

Citations

This map shows the geographic impact of Tyrone Ryba's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tyrone Ryba with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tyrone Ryba more than expected).

Fields of papers citing papers by Tyrone Ryba

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tyrone Ryba. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tyrone Ryba. The network helps show where Tyrone Ryba may publish in the future.

Co-authors

The 25 scholars most cited alongside Tyrone Ryba, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Tyrone Ryba Line = papers co-authored together Tyrone Ryba links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 21 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types Genome Research ·Tyrone Ryba, Ichiro Hiratani, Junjie Lu, Mari Itoh, Michael Kulik, Jinfeng Zhang, Thomas C. Schulz, Allan J. Robins, Stephen Dalton, David M. Gilbert	2010	440
2	Global Reorganization of Replication Domains During Embryonic Stem Cell Differentiation PLoS Biology ·Ichiro Hiratani, Tyrone Ryba, Mari Itoh, Tomoki Yokochi, Michaela Schwaiger, Chia‐Wei Chang, Yung Lyou, Tim M. Townes, Dirk Schübeler, David M. Gilbert	2008	424
3	Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis Genome Research ·Ichiro Hiratani, Tyrone Ryba, Mari Itoh, Joy Rathjen, Michael Kulik, Bernadett Papp, Eden Fussner, David P. Bazett‐Jones, Kathrin Plath, Stephen Dalton, Peter D. Rathjen, David M. Gilbert	2009	246
4	G9a selectively represses a class of late-replicating genes at the nuclear periphery Proceedings of the National Academy of Sciences ·Tomoki Yokochi, Kristina Poduch, Tyrone Ryba, Junjie Lu, Ichiro Hiratani, Makoto Tachibana, Yoichi Shinkai, David M. Gilbert	2009	122
5	Space and Time in the Nucleus: Developmental Control of Replication Timing and Chromosome Architecture Cold Spring Harbor Symposia on Quantitative Biology ·David M. Gilbert, Shin‐ichiro Takebayashi, Tyrone Ryba, Junjie Lu, Benjamin D. Pope, K. A. Wilson, Ichiro Hiratani	2010	87
6	Genome-scale analysis of replication timing: from bench to bioinformatics Nature Protocols ·Tyrone Ryba, Dana Battaglia, Benjamin D. Pope, Ichiro Hiratani, David M. Gilbert	2011	84
7	ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data BMC Bioinformatics ·Nodin Weddington, Alexander Stuy, Ichiro Hiratani, Tyrone Ryba, Tomoki Yokochi, David M. Gilbert	2008	70
8	Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia Genome Research ·Tyrone Ryba, Dana Battaglia, Bill H. Chang, James W. Shirley, Quinton Buckley, Benjamin D. Pope, Meenakshi Devidas, Brian Druker, David M. Gilbert	2012	70
9	Cancer, metastasis, and the epigenome Molecular Cancer ·Saurav Kiri, Tyrone Ryba Hit paper breakdown →	2024	65
10	Replication Timing: A Fingerprint for Cell Identity and Pluripotency PLoS Computational Biology ·Tyrone Ryba, Ichiro Hiratani, Takayo Sasaki, Dana Battaglia, Michael Kulik, Jinfeng Zhang, Stephen Dalton, David M. Gilbert	2011	65
11	Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding Proceedings of the National Academy of Sciences ·Shin‐ichiro Takebayashi, Vishnu Dileep, Tyrone Ryba, Jonathan H. Dennis, David M. Gilbert	2012	48
12	ANK1 Methylation regulates expression of MicroRNA-486-5p and discriminates lung tumors by histology and smoking status Cancer Letters ·Mathewos Tessema, Christin M. Yingling, Maria A. Picchi, Guodong Wu, Tyrone Ryba, Yong Lin, Aaron O. Bungum, Eric S. Edell, Avrum Spira, Steven A. Belinsky	2017	32
13	Murine esBAF chromatin remodeling complex subunits BAF250a and Brg1 are necessary to maintain and reprogram pluripotency-specific replication timing of select replication domains Epigenetics & Chromatin ·Shin‐ichiro Takebayashi, Ienglam Lei, Tyrone Ryba, Takayo Sasaki, Vishnu Dileep, Dana Battaglia, Xiaolin Gao, Fang Peng, Yong Fan, Miguel A. Esteban, Jiong Tang, Robert H. Crabtree, Zhong Wang, David M. Gilbert	2013	24
14	Replication-timing boundaries facilitate cell-type and species-specific regulation of a rearranged human chromosome in mouse Human Molecular Genetics ·Benjamin D. Pope, Tamir Chandra, Quinton Buckley, Matthew Hoare, Tyrone Ryba, Frances K. Wiseman, Anna Kuta, Michael D. Wilson, Duncan T. Odom, David M. Gilbert	2012	23
15	DNA Replication Timing Is Maintained Genome-Wide in Primary Human Myoblasts Independent of D4Z4 Contraction in FSH Muscular Dystrophy PLoS ONE ·Benjamin D. Pope, Koji Tsumagari, Dana Battaglia, Tyrone Ryba, Ichiro Hiratani, Melanie Ehrlich, David M. Gilbert	2011	18
16	Developmental control of replication timing defines a new breed of chromosomal domains with a novel mechanism of chromatin unfolding Nucleus ·Shin‐ichiro Takebayashi, Tyrone Ryba, David M. Gilbert	2012	15
17	RNA sequencing identifies common pathways between cigarette smoke exposure and replicative senescence in human airway epithelia BMC Genomics ·Hannah Voic, Xiuying Li, Jun-Ho Jang, Chunbin Zou, Prithu Sundd, Jonathan K. Alder, Mauricio Rojas, Divay Chandra, Scott H. Randell, Rama K. Mallampalli, Yohannes Tesfaigzi, Tyrone Ryba, Toru Nyunoya	2019	10
18	Global re‐organization of replication domains during embryonic stem cell differentiation The FASEB Journal ·David M. Gilbert, Ichiro Hiratani, Mari Hiratani, Tyrone Ryba, Shin‐ichiro Takebayashi	2009	10
19	The Temporal Order of DNA Replication Shaped by Mammalian DNA Methyltransferases Cells ·Shin‐ichiro Takebayashi, Tyrone Ryba, Kelsey Wimbish, Takuya Hayakawa, Morito Sakaue, Kenji Kuriya, Saori Takahashi, Shin Ogata, Ichiro Hiratani, Katsuzumi Okumura, Masaki Okano, Masato Ogata	2021	9
20	Thermal Stress Has Minimal Effects on Bacterial Communities of Thermotolerant Symbiodinium Cultures Frontiers in Ecology and Evolution ·Erika Díaz‐Almeyda, Tyrone Ryba, Aki Ohdera, Shannon M. Collins, Natali Shafer, Caroline Link, Marcela Prado-Zapata, Cara Ruhnke, Meredith Moore, Ana González, F. Joseph Pollock, Mónica Medina	2022	8

About Tyrone Ryba

Tyrone Ryba is a scholar working on Molecular Biology, Genetics, Cancer Research, Oceanography and Cell Biology, having authored 21 papers that have together received 1.9k indexed citations. Recurring topics across this work include Genomics and Chromatin Dynamics (14 papers), DNA Repair Mechanisms (10 papers), Epigenetics and DNA Methylation (9 papers), Genomic variations and chromosomal abnormalities (4 papers), Pluripotent Stem Cells Research (3 papers), MicroRNA in disease regulation (2 papers), Genetics and Neurodevelopmental Disorders (2 papers) and CRISPR and Genetic Engineering (2 papers). The work is most often cited by research in Molecular Biology (1.8k citations), Cancer Research (178 citations), Genetics (317 citations), Plant Science (283 citations) and Cell Biology (85 citations). Tyrone Ryba has collaborated with scholars based in United States, Japan and Australia. Frequent co-authors include David M. Gilbert, Ichiro Hiratani, Michael Kulik, Stephen Dalton, Junjie Lu, Tomoki Yokochi, Jinfeng Zhang, Thomas C. Schulz, Allan J. Robins and Michaela Schwaiger. Their work appears in journals such as Genome Research, Proceedings of the National Academy of Sciences, PLoS ONE, Human Molecular Genetics and Frontiers in Ecology and Evolution.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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