Tomasz Wirecki

2.8k total citations · 1 hit paper
12 papers, 1.9k citations indexed

About

Tomasz Wirecki is a scholar working on Molecular Biology, Materials Chemistry and Infectious Diseases. According to data from OpenAlex, Tomasz Wirecki has authored 12 papers receiving a total of 1.9k indexed citations (citations by other indexed papers that have themselves been cited), including 12 papers in Molecular Biology, 4 papers in Materials Chemistry and 1 paper in Infectious Diseases. Recurrent topics in Tomasz Wirecki's work include RNA and protein synthesis mechanisms (9 papers), RNA modifications and cancer (6 papers) and RNA Research and Splicing (6 papers). Tomasz Wirecki is often cited by papers focused on RNA and protein synthesis mechanisms (9 papers), RNA modifications and cancer (6 papers) and RNA Research and Splicing (6 papers). Tomasz Wirecki collaborates with scholars based in Poland, United States and Netherlands. Tomasz Wirecki's co-authors include Janusz M. Bujnicki, Pietro Boccaletto, Błażej Bagiński, Elżbieta Purta, Paweł Piątkowski, Annika Kötter, Magdalena A. Machnicka, Valérie de Crécy‐Lagard, Robert Ross and Patrick A. Limbach and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Proteins Structure Function and Bioinformatics.

In The Last Decade

Tomasz Wirecki

12 papers receiving 1.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

MODOMICS: a database of RNA modification pathways. 2017 update

2017 1.4k citations Pietro Boccaletto, Magdalena A. Machnicka et al. Nucleic Acids Research profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Tomasz Wirecki Poland	10	1.8k	510	151	100	92	12	1.9k
Carine Tisné France	25	1.7k 1.0×	355 0.7×	54 0.4×	71 0.7×	218 2.4×	75	2.0k
S. Kundhavai Natchiar France	17	1.1k 0.6×	234 0.5×	44 0.3×	72 0.7×	105 1.1×	22	1.3k
Chun Kit Kwok Hong Kong	31	3.6k 2.0×	535 1.0×	71 0.5×	81 0.8×	122 1.3×	85	3.8k
Marta Szachniuk Poland	22	1.8k 1.0×	163 0.3×	123 0.8×	35 0.3×	76 0.8×	60	2.0k
Josette Jeusset France	14	992 0.6×	165 0.3×	75 0.5×	47 0.5×	77 0.8×	23	1.3k
Vitaly Kuryavyi United States	19	4.5k 2.5×	118 0.2×	96 0.6×	113 1.1×	45 0.5×	23	4.6k
Harleen Kaur India	15	1.1k 0.6×	88 0.2×	50 0.3×	56 0.6×	81 0.9×	28	1.3k
Franck A. P. Vendeix United States	11	1.7k 1.0×	202 0.4×	49 0.3×	63 0.6×	18 0.2×	12	1.8k
Yuri Motorin France	40	5.8k 3.3×	1.7k 3.3×	59 0.4×	135 1.4×	56 0.6×	127	6.0k
Mariusz Popenda Poland	17	1.4k 0.8×	119 0.2×	85 0.6×	26 0.3×	67 0.7×	40	1.5k

Countries citing papers authored by Tomasz Wirecki

Since Specialization

Citations

This map shows the geographic impact of Tomasz Wirecki's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tomasz Wirecki with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tomasz Wirecki more than expected).

Fields of papers citing papers by Tomasz Wirecki

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tomasz Wirecki. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tomasz Wirecki. The network helps show where Tomasz Wirecki may publish in the future.

Co-authorship network of co-authors of Tomasz Wirecki

This figure shows the co-authorship network connecting the top 25 collaborators of Tomasz Wirecki. A scholar is included among the top collaborators of Tomasz Wirecki based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Tomasz Wirecki. Tomasz Wirecki is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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12 of 12 papers shown

Wirecki, Tomasz, et al.. (2025). DesiRNA: structure-based design of RNA sequences with a replica exchange Monte Carlo approach. Nucleic Acids Research. 53(2). 4 indexed citations

Moafinejad, S Naeim, M. Boniecki, Marcin Magnus, et al.. (2024). SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories. Nucleic Acids Research. 52(W1). W368–W373. 10 indexed citations

Baulin, Eugene F., Sunandan Mukherjee, S Naeim Moafinejad, et al.. (2023). RNA tertiary structure prediction in CASP15 by the GeneSilico group: Folding simulations based on statistical potentials and spatial restraints. Proteins Structure Function and Bioinformatics. 91(12). 1800–1810. 7 indexed citations

Sieradzan, Adam K., Cezary Czaplewski, Paweł Krupa, et al.. (2021). Modeling the Structure, Dynamics, and Transformations of Proteins with the UNRES Force Field. Methods in molecular biology. 2376. 399–416. 20 indexed citations

Nithin, Chandran, Almudena Ponce-Salvatierra, Pritha Ghosh, et al.. (2020). Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements. Nucleic Acids Research. 48(22). 12436–12452. 189 indexed citations

Wirecki, Tomasz, et al.. (2020). RNAProbe: a web server for normalization and analysis of RNA structure probing data. Nucleic Acids Research. 48(W1). W292–W299. 15 indexed citations

Wirecki, Tomasz, Chandran Nithin, Sunandan Mukherjee, Janusz M. Bujnicki, & M. Boniecki. (2020). Modeling of Three-Dimensional RNA Structures Using SimRNA. Methods in molecular biology. 2165. 103–125. 16 indexed citations

Boccaletto, Pietro, Marcin Magnus, Błażej Bagiński, et al.. (2017). RNArchitecture: a database and a classification system of RNA families, with a focus on structural information. Nucleic Acids Research. 46(D1). D202–D205. 27 indexed citations

Boccaletto, Pietro, Magdalena A. Machnicka, Elżbieta Purta, et al.. (2017). MODOMICS: a database of RNA modification pathways. 2017 update. Nucleic Acids Research. 46(D1). D303–D307. 1363 indexed citations breakdown →

10.

Zaborowski, Bartłomiej, Cezary Czaplewski, Agnieszka Lewandowska, et al.. (2015). A Maximum-Likelihood Approach to Force-Field Calibration. Journal of Chemical Information and Modeling. 55(9). 2050–2070. 30 indexed citations

11.

Liwo, Adam, Maciej Baranowski, Cezary Czaplewski, et al.. (2014). A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions. Journal of Molecular Modeling. 20(8). 2306–2306. 124 indexed citations

12.

He, Yi, Magdalena A. Mozolewska, Paweł Krupa, et al.. (2013). Lessons from application of the UNRES force field to predictions of structures of CASP10 targets. Proceedings of the National Academy of Sciences. 110(37). 14936–14941. 60 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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