Timothy E. Sweeney

6.1k citations

78 papers · 3.0k indexed · 1 hit paper · h-index 29

Impact in

Epidemiology top 2%
- Sepsis Diagnosis and Treatment
- Mycobacterium research and diagnosis
Critical Care and Intensive Care Medicine top 2%

Papers in ⓘ

Clinical Biochemistry 15
- Bacterial Identification and Susceptibility Testing 15
Critical Care and Intensive Care Medicine 7

Co-authors: Purvesh Khatri (30 shared papers)Hector R. Wong (8 shared papers)John M. Morton (2 shared papers)Cristina M. Tato (2 shared papers)Claude A. Piantadosi (6 shared papers)Hagir B. Suliman (6 shared papers)Karen E. Welty‐Wolf (4 shared papers)Raquel R. Bartz (3 shared papers)
Journals: Critical Care Medicine (11 papers)Scientific Reports (4 papers)Critical Care (3 papers)Journal of Personalized Medicine (3 papers)PLoS ONE (3 papers)
Partner nations: United States Canada Netherlands

In The Last Decade

Timothy E. Sweeney

76 papers receiving 3.0k citations

Hit Papers

align trajectories log scale

Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis 2016 · 275 citations

Peers

Countries citing papers authored by Timothy E. Sweeney

Since Specialization

Citations

This map shows the geographic impact of Timothy E. Sweeney's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Timothy E. Sweeney with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Timothy E. Sweeney more than expected).

Fields of papers citing papers by Timothy E. Sweeney

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Timothy E. Sweeney. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Timothy E. Sweeney. The network helps show where Timothy E. Sweeney may publish in the future.

Co-authors

The 25 scholars most cited alongside Timothy E. Sweeney, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Timothy E. Sweeney Line = papers co-authored together Timothy E. Sweeney links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 78 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis The Lancet Respiratory Medicine ·Timothy E. Sweeney, Lindsay Braviak, Cristina M. Tato, Purvesh Khatri Hit paper breakdown →	2016	275
2	Heme Oxygenase-1 Couples Activation of Mitochondrial Biogenesis to Anti-inflammatory Cytokine Expression Journal of Biological Chemistry ·Claude A. Piantadosi, Crystal M. Withers, Raquel R. Bartz, Nancy Chou MacGarvey, Ping Fu, Timothy E. Sweeney, Karen E. Welty‐Wolf, Hagir B. Suliman	2011	211
3	Robust classification of bacterial and viral infections via integrated host gene expression diagnostics Science Translational Medicine ·Timothy E. Sweeney, Hector R. Wong, Purvesh Khatri	2016	206
4	A comprehensive time-course–based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set Science Translational Medicine ·Timothy E. Sweeney, Aaditya Shidham, Hector R. Wong, Purvesh Khatri	2015	205
5	The Human Gut Microbiome JAMA Surgery ·Timothy E. Sweeney, John M. Morton	2013	192
6	Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses Immunity ·Marta Andres-Terrè, Helen M. McGuire, Yannick Pouliot, Erika Bongen, Timothy E. Sweeney, Cristina M. Tato, Purvesh Khatri	2015	120
7	Complement pathway amplifies caspase-11–dependent cell death and endotoxin-induced sepsis severity The Journal of Experimental Medicine ·Brooke A. Napier, Sky W. Brubaker, Timothy E. Sweeney, Patrick Monette, Greggory H. Rothmeier, Nina Gertsvolf, Andreas S. Puschnik, Jan E. Carette, Purvesh Khatri, Denise M. Monack	2016	117
8	Learning statistical models of phenotypes using noisy labeled training data Journal of the American Medical Informatics Association ·Vibhu Agarwal, Tanya Podchiyska, Juan M. Banda, Veena Goel, Tiffany I. Leung, Evan Minty, Timothy E. Sweeney, Elsie Gyang, Nigam H. Shah	2016	96
9	Metabolic surgery: Action via hormonal milieu changes, changes in bile acids or gut microbiota? A summary of the literature Best Practice & Research Clinical Gastroenterology ·Timothy E. Sweeney, John M. Morton	2014	95
10	Methods to increase reproducibility in differential gene expression via meta-analysis Nucleic Acids Research ·Timothy E. Sweeney, Winston Haynes, Francesco Vallania, John P. A. Ioannidis, Purvesh Khatri	2016	86
11	Assessment of Validity of a Blood-Based 3-Gene Signature Score for Progression and Diagnosis of Tuberculosis, Disease Severity, and Treatment Response JAMA Network Open ·Hayley Warsinske, Aditya Rao, Flora Martinez Figueira Moreira, Paulo César Pereira dos Santos, Andrew Bo Liu, Madeleine Scott, Stephaus T. Malherbe, Katharina Ronacher, Gerhard Walzl, Jill Winter, Timothy E. Sweeney, Júlio Croda, Jason R. Andrews, Purvesh Khatri	2018	79
12	EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY PubMed ·Winston Haynes, Francesco Vallania, Charles Y. Liu, Erika Bongen, Aurelie Tomczak, Marta Andres-Terrè, Shane Lofgren, Andrew Tam, Cole A. Deisseroth, Matthew Li, Timothy E. Sweeney, Purvesh Khatri	2016	77
13	A generalizable 29-mRNA neural-network classifier for acute bacterial and viral infections Nature Communications ·Michael B. Mayhew, Ljubomir Buturović, Roland Luethy, Uros Midic, A. R. Moore, Jonasel Roque, Brian D. Shaller, T. Asuni, David Rawling, Melissa Remmel, Kirindi Choi, James Wacker, Purvesh Khatri, Angela J. Rogers, Timothy E. Sweeney	2020	72
14	Encouraging Mindfulness in Medical House Staff via Smartphone App: A Pilot Study Academic Psychiatry ·Louise Wen, Timothy E. Sweeney, Lindsay Welton, Mickey Trockel, Laurence Katznelson	2017	72
15	Co-regulation of nuclear respiratory factor-1 by NFκB and CREB links LPS-induced inflammation to mitochondrial biogenesis Journal of Cell Science ·Hagir B. Suliman, Timothy E. Sweeney, Crystal M. Withers, Claude A. Piantadosi	2010	66
16	Identifying Distinct Subgroups of ICU Patients: A Machine Learning Approach* Critical Care Medicine ·Kelly C. Vranas, Jeffrey K. Jopling, Timothy E. Sweeney, Meghan Ramsey, Arnold Milstein, Christopher G. Slatore, Gabriel J. Escobar, Jean‐Louis Vincent	2017	59
17	Benchmarking Sepsis Gene Expression Diagnostics Using Public Data* Critical Care Medicine ·Timothy E. Sweeney, Purvesh Khatri	2016	57
18	Transcriptomic similarities and differences in host response between SARS-CoV-2 and other viral infections iScience ·Simone A. Thair, Yudong D. He, Yehudit Hasin-Brumshtein, Suraj Sakaram, Rushika Pandya, Jiaying Toh, David Rawling, Melissa Remmel, Sabrina Coyle, George Ν. Dalekos, Ioannis Koutsodimitropoulos, Glykeria Vlachogianni, Eleni Gkeka, Eleni Karakike, Georgia Damoraki, Nikolaos Antonakos, Purvesh Khatri, Evangelos J. Giamarellos‐Bourboulis, Timothy E. Sweeney	2020	56
19	A 20-Gene Set Predictive of Progression to Severe Dengue Cell Reports ·Makeda Robinson, Timothy E. Sweeney, Rina Barouch‐Bentov, Malaya K. Sahoo, Larry Kalesinskas, Francesco Vallania, Ana María Sanz, Eliana Ortiz-Lasso, Ludwig L. Albornóz, Fernando Rosso, José G. Montoya, Benjamin A. Pinsky, Purvesh Khatri, Shirit Einav	2019	50
20	Differential Regulation of the PGC Family of Genes in a Mouse Model of Staphylococcus aureus Sepsis PLoS ONE ·Timothy E. Sweeney, Hagir B. Suliman, John W. Hollingsworth, Claude A. Piantadosi	2010	45

About Timothy E. Sweeney

Timothy E. Sweeney is a scholar working on Clinical Biochemistry, Critical Care and Intensive Care Medicine, Epidemiology, Infectious Diseases and Emergency Medicine, having authored 78 papers that have together received 3.0k indexed citations. Recurring topics across this work include Sepsis Diagnosis and Treatment (34 papers), Bacterial Identification and Susceptibility Testing (15 papers), Neonatal and Maternal Infections (10 papers), Immune Response and Inflammation (10 papers), Pneumonia and Respiratory Infections (5 papers), Respiratory viral infections research (5 papers), Tuberculosis Research and Epidemiology (4 papers) and Influenza Virus Research Studies (4 papers). The work is most often cited by research in Epidemiology (1.2k citations), Critical Care and Intensive Care Medicine (175 citations), Infectious Diseases (580 citations), Clinical Biochemistry (197 citations) and Immunology (551 citations). Timothy E. Sweeney has collaborated with scholars based in United States, Canada and Netherlands. Frequent co-authors include Purvesh Khatri, Hector R. Wong, John M. Morton, Cristina M. Tato, Claude A. Piantadosi, Hagir B. Suliman, Karen E. Welty‐Wolf, Raquel R. Bartz, Ping Fu and Nancy Chou MacGarvey. Their work appears in journals such as Critical Care Medicine, Scientific Reports, Critical Care, Journal of Personalized Medicine and PLoS ONE.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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