Thomas Junier

5.8k citations

61 papers · 2.3k indexed · 1 hit paper · h-index 27

Impact in

Virology top 5%
- HIV Research and Treatment
Ecology top 2%
- Microbial Community Ecology and Physiology

Papers in ⓘ

Molecular Biology 30
- Genomics and Phylogenetic Studies 24
- Protist diversity and phylogeny 9
Ecology 28
- Microbial Community Ecology and Physiology 23
- Bacteriophages and microbial interactions 6
- Environmental DNA in Biodiversity Studies 4

Co-authors: Evgeny M. Zdobnov (11 shared papers)Pilar Junier (38 shared papers)Tina Wunderlin (18 shared papers)Karl‐Paul Witzel (5 shared papers)Laurent Kaiser (11 shared papers)Nicole Jeanneret (11 shared papers)Marco Pagni (4 shared papers)Verónica Molina (4 shared papers)
Journals: Bioinformatics (3 papers)Applied and Environmental Microbiology (3 papers)BMC Genomics (3 papers)PLoS ONE (3 papers)Frontiers in Microbiology (2 papers)
Partner nations: Switzerland United States Germany

In The Last Decade

Thomas Junier

60 papers receiving 2.2k citations

Hit Papers

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The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell 2010 · 526 citations

Peers

Countries citing papers authored by Thomas Junier

Since Specialization

Citations

This map shows the geographic impact of Thomas Junier's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Thomas Junier with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Thomas Junier more than expected).

Fields of papers citing papers by Thomas Junier

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Thomas Junier. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Thomas Junier. The network helps show where Thomas Junier may publish in the future.

Co-authors

The 25 scholars most cited alongside Thomas Junier, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Thomas Junier Line = papers co-authored together Thomas Junier links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 61 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell Bioinformatics ·Thomas Junier, Evgeny M. Zdobnov Hit paper breakdown →	2010	526
2	Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment Applied Microbiology and Biotechnology ·Pilar Junier, Verónica Molina, Cristina Dorador, Ora Hadas, Ok-Sun Kim, Thomas Junier, Karl‐Paul Witzel, Johannes F. Imhoff	2009	135
3	A Combination of Extreme Environmental Conditions Favor the Prevalence of Endospore-Forming Firmicutes Frontiers in Microbiology ·Sevasti Filippidou, Tina Wunderlin, Thomas Junier, Nicole Jeanneret, Cristina Dorador, Verónica Molina, David R. Johnson, Pilar Junier	2016	133
4	New Respiratory Enterovirus and Recombinant Rhinoviruses among Circulating Picornaviruses Emerging infectious diseases ·Caroline Tapparel, Thomas Junier, Daniel Gerlach, Sandra Van Belle, Lara Turin, Samuel Cordey, Kathrin Mühlemann, Nicolas Regamey, John‐David Aubert, Paola M. Soccal, Philippe Eigenmann, Evgeny M. Zdobnov, Laurent Kaiser	2009	113
5	The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection AIDS ·Sabine Yerly, Thomas Junier, Angèle Gayet‐Ageron, Emmanuelle Boffi El Amari, Viktor von Wyl, Huldrych F. Günthard, Bernard Hirschel, Evgeny M. Zdobnov, Laurent Kaiser	2009	86
6	Dotlet: diagonal plots in a Web browser Bioinformatics ·Thomas Junier, Marco Pagni	2000	79
7	Under-detection of endospore-forming Firmicutes in metagenomic data Computational and Structural Biotechnology Journal ·Sevasti Filippidou, Thomas Junier, Tina Wunderlin, Chien‐Chi Lo, Po-E Li, Patrick Chain, Pilar Junier	2015	77
8	TRiFLe, a Program for In Silico Terminal Restriction Fragment Length Polymorphism Analysis with User-Defined Sequence Sets Applied and Environmental Microbiology ·Pilar Junier, Thomas Junier, Karl‐Paul Witzel	2008	76
9	Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species BMC Genomics ·Nicolas González, Stephan Heeb, Claudio Valverde, Elisabeth Kay, Cornelia Reimmann, Thomas Junier, Dieter Haas	2008	60
10	New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features BMC Genomics ·Caroline Tapparel, Thomas Junier, Daniel Gerlach, Samuel Cordey, Sandra Van Belle, Luc Perrin, Evgeny M. Zdobnov, Laurent Kaiser	2007	58
11	Purifying Selection in Mammalian Mitochondrial Protein-Coding Genes Is Highly Effective and Congruent with Evolution of Nuclear Genes Molecular Biology and Evolution ·Konstantin Popadin, Sergey I. Nikolaev, Thomas Junier, Maria Baranova, Stylianos E. Antonarakis	2012	51
12	The genome of the Gram‐positive metal‐ and sulfate‐reducing bacterium Desulfotomaculum reducens strain MI‐1 Environmental Microbiology ·Pilar Junier, Thomas Junier, Sheila Podell, David R. Sims, John C. Detter, Athanasios Lykidis, Cliff Han, N. S. Wigginton, Terry Gaasterland, Rizlan Bernier‐Latmani	2010	51
13	The cis-acting replication elements define human enterovirus and rhinovirus species RNA ·Samuel Cordey, Daniel Gerlach, Thomas Junier, Evgeny M. Zdobnov, Laurent Kaiser, Caroline Tapparel	2008	49
14	Diversity and ecology of oxalotrophic bacteria World Journal of Microbiology and Biotechnology ·Vincent Hervé, Thomas Junier, Saskia Bindschedler, Éric P. Verrecchia, Pilar Junier	2016	48
15	Rhinovirus Genome Variation during Chronic Upper and Lower Respiratory Tract Infections PLoS ONE ·Caroline Tapparel, Samuel Cordey, Thomas Junier, Laurent Farinelli, Sandra Van Belle, Paola M. Soccal, John‐David Aubert, Evgeny M. Zdobnov, Laurent Kaiser	2011	45
16	Rhinovirus Genome Evolution during Experimental Human Infection PLoS ONE ·Samuel Cordey, Thomas Junier, Daniel Gerlach, Francesca Gobbini, Laurent Farinelli, Evgeny M. Zdobnov, Birgit Winther, Caroline Tapparel, Laurent Kaiser	2010	41
17	Endospore‐enriched sequencing approach reveals unprecedented diversity of F irmicutes in sediments Environmental Microbiology Reports ·Tina Wunderlin, Thomas Junier, Ludovic Roussel‐Delif, Nicole Jeanneret, Pilar Junier	2014	40
18	Impact of highly active antiretroviral therapy on the molecular epidemiology of newly diagnosed HIV infections AIDS ·Juan Ambrosioni, Thomas Junier, Cécile Delhumeau, Alexandra Calmy, Bernard Hirschel, Evgeny M. Zdobnov, Laurent Kaiser, Sabine Yerly	2012	39
19	Evaluation of Computer Tools for the Prediction of Transcription Factor Binding Sites on Genomic DNA In Silico Biology ·E. Roulet, Igor Fisch, Thomas Junier, Philipp Bücher, Nicolas Mermod	1998	38
20	Quantification of Endospore-Forming Firmicutes by Quantitative PCR with the Functional Genespo0A Applied and Environmental Microbiology ·Matthieu Bueche, Tina Wunderlin, Ludovic Roussel‐Delif, Thomas Junier, L. Sauvain, Nicole Jeanneret, Pilar Junier	2013	38

About Thomas Junier

Thomas Junier is a scholar working on Molecular Biology, Ecology, Plant Science, Pollution and Epidemiology, having authored 61 papers that have together received 2.3k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (24 papers), Microbial Community Ecology and Physiology (23 papers), Protist diversity and phylogeny (9 papers), Respiratory viral infections research (7 papers), Bacteriophages and microbial interactions (6 papers), Viral Infections and Immunology Research (5 papers), HIV/AIDS Research and Interventions (4 papers) and Environmental DNA in Biodiversity Studies (4 papers). The work is most often cited by research in Virology (126 citations), Ecology (670 citations), Pollution (277 citations), Infectious Diseases (328 citations) and Environmental Chemistry (141 citations). Thomas Junier has collaborated with scholars based in Switzerland, United States and Germany. Frequent co-authors include Evgeny M. Zdobnov, Pilar Junier, Tina Wunderlin, Karl‐Paul Witzel, Laurent Kaiser, Nicole Jeanneret, Marco Pagni, Verónica Molina, Sevasti Filippidou and Cristina Dorador. Their work appears in journals such as Bioinformatics, Applied and Environmental Microbiology, BMC Genomics, PLoS ONE and Frontiers in Microbiology.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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