Chien‐Chi Lo

5.0k total citations · 1 hit paper
61 papers, 2.7k citations indexed

About

Chien‐Chi Lo is a scholar working on Molecular Biology, Ecology and Genetics. According to data from OpenAlex, Chien‐Chi Lo has authored 61 papers receiving a total of 2.7k indexed citations (citations by other indexed papers that have themselves been cited), including 40 papers in Molecular Biology, 18 papers in Ecology and 9 papers in Genetics. Recurrent topics in Chien‐Chi Lo's work include Genomics and Phylogenetic Studies (32 papers), Microbial Community Ecology and Physiology (13 papers) and Bacteriophages and microbial interactions (8 papers). Chien‐Chi Lo is often cited by papers focused on Genomics and Phylogenetic Studies (32 papers), Microbial Community Ecology and Physiology (13 papers) and Bacteriophages and microbial interactions (8 papers). Chien‐Chi Lo collaborates with scholars based in United States, Switzerland and Germany. Chien‐Chi Lo's co-authors include Patrick Chain, Matthew Scholz, Migun Shakya, Gary Xie, Karen W. Davenport, Sanaa Ahmed, Kuan-Liang Liu, Fang Yang, Xiaowei Zeng and Kang Ning and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

In The Last Decade

Chien‐Chi Lo

61 papers receiving 2.7k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Advances and Challenges in Metatranscriptomic Analysis

2019 267 citations Migun Shakya, Chien‐Chi Lo et al. profile →

Peers

Countries citing papers authored by Chien‐Chi Lo

Since Specialization

Citations

This map shows the geographic impact of Chien‐Chi Lo's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Chien‐Chi Lo with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Chien‐Chi Lo more than expected).

Fields of papers citing papers by Chien‐Chi Lo

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Chien‐Chi Lo. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Chien‐Chi Lo. The network helps show where Chien‐Chi Lo may publish in the future.

Co-authorship network of co-authors of Chien‐Chi Lo

This figure shows the co-authorship network connecting the top 25 collaborators of Chien‐Chi Lo. A scholar is included among the top collaborators of Chien‐Chi Lo based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Chien‐Chi Lo. Chien‐Chi Lo is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Genomic and Phenotypic Characterization of Shiga Toxin-Producing Escherichia albertii Strains Isolated from Wild Birds in a Major Agricultural Region in California 2023 ·Microorganisms ·Michelle Qiu Carter, Beatriz Quiñones, Xiaohua He, (unknown), Diana Carychao, Michael B. Cooley, Chien‐Chi Lo, Patrick Chain, Rebecca L. Lindsey, James L. Bono	5
2	EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts 2022 ·Bioinformatics ·Chien‐Chi Lo, Migun Shakya, Ryan Connor, Karen W. Davenport, Mark Flynn, (unknown), Bin Hu, Po‐E Li, (unknown), Yan Xu, Patrick Chain	8
3	Discovery of an Antarctic Ascidian-Associated Uncultivated Verrucomicrobia with Antimelanoma Palmerolide Biosynthetic Potential 2021 ·mSphere ·Alison E. Murray, Chien‐Chi Lo, Hajnalka Daligault, Nicole E. Avalon, Robert W. Read, Karen W. Davenport, (unknown), Yuliya A. Kunde, Armand E. K. Dichosa, Bill J. Baker, Patrick Chain	14
4	Bioinformatic and Mechanistic Analysis of the Palmerolide PKS-NRPS Biosynthetic Pathway From the Microbiome of an Antarctic Ascidian 2021 ·Frontiers in Chemistry ·Nicole E. Avalon, Alison E. Murray, Hajnalka E. Daligault, Chien‐Chi Lo, Karen W. Davenport, Armand E. K. Dichosa, Patrick Chain, Bill J. Baker	12
5	Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life 2020 ·Scientific Reports ·Migun Shakya, Sanaa Ahmed, Karen W. Davenport, (unknown), Chien‐Chi Lo, Patrick Chain	69
6	Uncovering the Core Microbiome and Distribution of Palmerolide in Synoicum adareanum Across the Anvers Island Archipelago, Antarctica 2020 ·Marine Drugs ·Alison E. Murray, Nicole E. Avalon, (unknown), Karen W. Davenport, Erwan Delage, Armand E. K. Dichosa, Damien Eveillard, (unknown), (unknown), Chien‐Chi Lo, Christian S. Riesenfeld, (unknown), Patrick Chain, Bill J. Baker	12
7	Diagnostic targETEd seQuencing adjudicaTion (DETEQT) 2018 ·Journal of Molecular Diagnostics ·(unknown), Chien‐Chi Lo, Jeffrey W. Koehler, Amanda S. Graham, Christopher P. Stefan, Adrienne T. Hall, (unknown), Patrick Chain, Timothy D. Minogue	5
8	Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach 2017 ·PLoS ONE ·Erin A. Gontang, Frank O. Aylward, Camila Carlos, Tijana Glavina Del Rio, Mansi Chovatia, (unknown), Chien‐Chi Lo, Stephanie Malfatti, Susannah G. Tringe, Cameron R. Currie, Roberto Kolter	20
9	Brief Protocol for EDGE Bioinformatics: Analyzing Microbial and Metagenomic NGS Data 2017 ·BIO-PROTOCOL ·Casandra Philipson, Karen W. Davenport, Logan J. Voegtly, Chien‐Chi Lo, Po‐E Li, Yan Xu, Migun Shakya, Regina Z. Cer, Kimberly A. Bishop‐Lilly, (unknown), Patrick Chain	5
10	Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform 2016 ·Nucleic Acids Research ·Po‐E Li, Chien‐Chi Lo, Joseph Anderson, Karen W. Davenport, Kimberly A. Bishop‐Lilly, Yan Xu, Sanaa Ahmed, Shihai Feng, Vishwesh Mokashi, Patrick Chain	126
11	CRP-Mediated Carbon Catabolite Regulation of Yersinia pestis Biofilm Formation Is Enhanced by the Carbon Storage Regulator Protein, CsrA 2015 ·PLoS ONE ·(unknown), Sadhana Chauhan, Chien‐Chi Lo, Patrick Chain, Vladimir L. Motin	31
12	Under-detection of endospore-forming Firmicutes in metagenomic data 2015 ·Computational and Structural Biotechnology Journal ·Sevasti Filippidou, Thomas Junier, Tina Wunderlin, Chien‐Chi Lo, (unknown), Patrick Chain, Pilar Junier	77
13	Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs 2014 ·Scientific Reports ·Matthew Scholz, Chien‐Chi Lo, Patrick Chain	30
14	Rapid evaluation and quality control of next generation sequencing data with FaQCs 2014 ·BMC Bioinformatics ·Chien‐Chi Lo, Patrick Chain	171
15	Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage 2013 ·RePEc: Research Papers in Economics ·Jeremy A. Dodsworth, Paul C. Blainey, Senthil K. Murugapiran, Wesley D. Swingley, Christian Roß, Susannah G. Tringe, Patrick Chain, Matthew Scholz, Chien‐Chi Lo, Jason Raymond, Stephen R. Quake, Brian P. Hedlund	1
16	Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage 2013 ·Nature Communications ·Jeremy A. Dodsworth, Paul C. Blainey, Senthil K. Murugapiran, Wesley D. Swingley, Christian Roß, Susannah G. Tringe, Patrick Chain, Matthew Scholz, Chien‐Chi Lo, Jason Raymond, Stephen R. Quake, Brian P. Hedlund	155
17	Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia 2012 ·PLoS ONE ·Manuel Martínez‐García, David M. Brazel, Brandon K. Swan, Carol Arnosti, Patrick Chain, Krista G. Reitenga, Gary Xie, Nicole Poulton, Mónica Lluesma Gómez, (unknown), Brian Thompson, Wendy K. Bellows, Kai Ziervogel, Chien‐Chi Lo, Sanaa Ahmed, Cheryl D. Gleasner, Chris Detter, Ramūnas Stepanauskas	210
18	Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics 2011 ·Briefings in Functional Genomics ·Bin Hu, Gary Xie, Chien‐Chi Lo, Shawn R. Starkenburg, Patrick Chain	33
19	Genomics for Key Players in the N Cycle 2011 ·Methods in enzymology on CD-ROM/Methods in enzymology ·Patrick Chain, Gary Xie, Shawn R. Starkenburg, Matthew Scholz, Nicholas Beckloff, Chien‐Chi Lo, Karen W. Davenport, Krista G. Reitenga, Hajnalka E. Daligault, John C. Detter, Tracey Freitas, Cheryl D. Gleasner, Lance D. Green, Cliff Han, Kim McMurry, Linda Meincke, (unknown), Ahmet Zeytun	3
20	Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo 2009 ·PLoS ONE ·Athe Tsibris, Bette Korber, Ramy Arnaout, Carsten Russ, Chien‐Chi Lo, Thomas Leitner, Brian Gaschen, James Theiler, Roger Paredes, Zhaohui Su, Michael D. Hughes, Roy M. Gulick, Wayne Greaves, Eoin Coakley, Charles Flexner, Chad Nusbaum, Daniel R. Kuritzkes	178

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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