Simone S. Li

2.4k total citations · 2 hit papers
20 papers, 1.4k citations indexed

About

Simone S. Li is a scholar working on Molecular Biology, Food Science and Ecology. According to data from OpenAlex, Simone S. Li has authored 20 papers receiving a total of 1.4k indexed citations (citations by other indexed papers that have themselves been cited), including 19 papers in Molecular Biology, 5 papers in Food Science and 3 papers in Ecology. Recurrent topics in Simone S. Li's work include Bioinformatics and Genomic Networks (8 papers), Gut microbiota and health (5 papers) and Genomics and Phylogenetic Studies (4 papers). Simone S. Li is often cited by papers focused on Bioinformatics and Genomic Networks (8 papers), Gut microbiota and health (5 papers) and Genomics and Phylogenetic Studies (4 papers). Simone S. Li collaborates with scholars based in Australia, Germany and Denmark. Simone S. Li's co-authors include Shinichi Sunagawa, Peer Bork, Anita Y. Voigt, Georg Zeller, Paul Igor Costea, Jaime Huerta‐Cepas, Luís Pedro Coelho, Falk Hildebrand, Jens Roat Kultima and Jarkko Salojärvi and has published in prestigious journals such as Science, Nucleic Acids Research and Nature Communications.

In The Last Decade

Simone S. Li

20 papers receiving 1.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Durable coexistence of donor and recipient strains after fecal microbiota transplantation

2016 389 citations Simone S. Li, Ana Zhu et al. Science profile →
Extensive transmission of microbes along the gastrointestinal tract

2019 376 citations Thomas Schmidt, Matthew R. Hayward et al. eLife profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Simone S. Li Australia	13	1.1k	368	194	179	174	20	1.4k
Casey DuLong United States	7	1.3k 1.2×	248 0.7×	233 1.2×	233 1.3×	66 0.4×	8	1.6k
Allison Perrotta United States	12	743 0.7×	222 0.6×	205 1.1×	121 0.7×	56 0.3×	17	1.2k
Nicolai Karcher Italy	8	1.2k 1.1×	241 0.7×	162 0.8×	244 1.4×	49 0.3×	10	1.4k
Ana Zhu Germany	6	1.4k 1.3×	497 1.4×	242 1.2×	306 1.7×	32 0.2×	8	1.7k
Matthew C. Wong United States	6	845 0.8×	359 1.0×	138 0.7×	205 1.1×	39 0.2×	6	1.1k
Jarmo Ritari Finland	20	1.0k 1.0×	172 0.5×	205 1.1×	493 2.8×	44 0.3×	56	1.6k
Na Wu China	16	1.1k 1.0×	242 0.7×	282 1.5×	186 1.0×	34 0.2×	57	1.6k
Karthik Kota United States	6	719 0.7×	195 0.5×	128 0.7×	155 0.9×	41 0.2×	7	922
Blessing O. Anonye United Kingdom	5	987 0.9×	345 0.9×	110 0.6×	304 1.7×	25 0.1×	7	1.2k

Countries citing papers authored by Simone S. Li

Since Specialization

Citations

This map shows the geographic impact of Simone S. Li's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Simone S. Li with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Simone S. Li more than expected).

Fields of papers citing papers by Simone S. Li

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Simone S. Li. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Simone S. Li. The network helps show where Simone S. Li may publish in the future.

Co-authorship network of co-authors of Simone S. Li

This figure shows the co-authorship network connecting the top 25 collaborators of Simone S. Li. A scholar is included among the top collaborators of Simone S. Li based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Simone S. Li. Simone S. Li is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Li, Simone S., et al.. (2025). Metagenome-guided culturomics for the targeted enrichment of gut microbes. Nature Communications. 16(1). 663–663. 8 indexed citations

Lino, Felipe Senne De Oliveira, Shilpa Garg, Simone S. Li, et al.. (2024). Strain dynamics of contaminating bacteria modulate the yield of ethanol biorefineries. Nature Communications. 15(1). 5323–5323. 3 indexed citations

Vazquez-Uribe, Ruben, et al.. (2021). Bacterial resistance to CRISPR-Cas antimicrobials. Scientific Reports. 11(1). 17267–17267. 48 indexed citations

Maistrenko, Oleksandr M., Daniel R. Mende, Falk Hildebrand, et al.. (2020). Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity. The ISME Journal. 14(5). 1247–1259. 67 indexed citations

Schmidt, Thomas, Matthew R. Hayward, Luís Pedro Coelho, et al.. (2019). Extensive transmission of microbes along the gastrointestinal tract. eLife. 8. 376 indexed citations breakdown →

Mende, Daniel R., Ivica Letunić, Jaime Huerta‐Cepas, et al.. (2016). proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes. Nucleic Acids Research. 45(D1). D529–D534. 94 indexed citations

Li, Simone S., Ana Zhu, Vladimı́r Beneš, et al.. (2016). Durable coexistence of donor and recipient strains after fecal microbiota transplantation. Science. 352(6285). 586–589. 389 indexed citations breakdown →

Kultima, Jens Roat, Luís Pedro Coelho, Sofia K. Forslund, et al.. (2016). MOCAT2: a metagenomic assembly, annotation and profiling framework. Bioinformatics. 32(16). 2520–2523. 116 indexed citations

Voigt, Anita Y., Paul Igor Costea, Jens Roat Kultima, et al.. (2015). Temporal and technical variability of human gut metagenomes. Genome Biology. 16(1). 73–73. 121 indexed citations

10.

Schramm, Sarah‐Jane, Simone S. Li, Vivek Jayaswal, et al.. (2013). Disturbed protein–protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden. Pigment Cell & Melanoma Research. 26(5). 708–722. 9 indexed citations

11.

Schramm, Sarah‐Jane, Vivek Jayaswal, Simone S. Li, et al.. (2013). Molecular interaction networks for the analysis of human disease: Utility, limitations, and considerations. PROTEOMICS. 13(23-24). 3393–3405. 12 indexed citations

12.

Campbell, Leona T., Matthew P. Padula, Cameron J. Hill, et al.. (2012). Time-Course Proteome Analysis Reveals the Dynamic Response of Cryptococcus gattii Cells to Fluconazole. PLoS ONE. 7(8). e42835–e42835. 22 indexed citations

13.

Ayer, Anita, Christopher M. Fife, Simone S. Li, et al.. (2012). A Genome-Wide Screen in Yeast Identifies Specific Oxidative Stress Genes Required for the Maintenance of Sub-Cellular Redox Homeostasis. PLoS ONE. 7(9). e44278–e44278. 37 indexed citations

14.

Fung, David C. Y., et al.. (2012). Visualization of the interactome: What are we looking at?. PROTEOMICS. 12(10). 1669–1686. 9 indexed citations

15.

Pang, Chi Nam Ignatius, et al.. (2012). A Multidimensional Matrix for Systems Biology Research and Its Application to Interaction Networks. Journal of Proteome Research. 11(11). 5204–5220. 5 indexed citations

16.

Deshpande, Nandan, Nadeem O. Kaakoush, Hazel M. Mitchell, et al.. (2011). Sequencing and Validation of the Genome of a Campylobacter concisus Reveals Intra-Species Diversity. PLoS ONE. 6(7). e22170–e22170. 28 indexed citations

17.

Li, Simone S., et al.. (2011). Four‐dimensional visualisation and analysis of protein–protein interaction networks. PROTEOMICS. 11(13). 2672–2682. 14 indexed citations

18.

Li, Simone S., Kai Xu, & Marc R. Wilkins. (2011). Visualization and Analysis of the Complexome Network of Saccharomyces cerevisiae. Journal of Proteome Research. 10(10). 4744–4756. 13 indexed citations

19.

Ma, Liang, Chi Nam Ignatius Pang, Simone S. Li, & Marc R. Wilkins. (2010). Proteins Deleterious on Overexpression Are Associated with High Intrinsic Disorder, Specific Interaction Domains, and Low Abundance. Journal of Proteome Research. 9(3). 1218–1225. 16 indexed citations

20.

Pang, Chi Nam Ignatius, et al.. (2009). The Interactorium: Visualising proteins, complexes and interaction networks in a virtual 3‐D cell. PROTEOMICS. 9(23). 5309–5315. 6 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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