Simone Marsili

1.1k total citations
23 papers, 811 citations indexed

About

Simone Marsili is a scholar working on Molecular Biology, Statistical and Nonlinear Physics and Atomic and Molecular Physics, and Optics. According to data from OpenAlex, Simone Marsili has authored 23 papers receiving a total of 811 indexed citations (citations by other indexed papers that have themselves been cited), including 13 papers in Molecular Biology, 8 papers in Statistical and Nonlinear Physics and 7 papers in Atomic and Molecular Physics, and Optics. Recurrent topics in Simone Marsili's work include Advanced Thermodynamics and Statistical Mechanics (7 papers), Protein Structure and Dynamics (7 papers) and Spectroscopy and Quantum Chemical Studies (6 papers). Simone Marsili is often cited by papers focused on Advanced Thermodynamics and Statistical Mechanics (7 papers), Protein Structure and Dynamics (7 papers) and Spectroscopy and Quantum Chemical Studies (6 papers). Simone Marsili collaborates with scholars based in Italy, Spain and United Kingdom. Simone Marsili's co-authors include Piero Procacci, Riccardo Chelli, Ludovico Sutto, Francesco Luigi Gervasio, Alessandro Barducci, Vincenzo Schettino, Alfonso Valencia, Giorgio F. Signorini, Massimo Marchi and Paolo De Los Rios and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Journal of the American Chemical Society and The Journal of Chemical Physics.

In The Last Decade

Simone Marsili

23 papers receiving 801 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Simone Marsili Italy 14 535 226 167 158 90 23 811
Nandou Lu United States 9 295 0.6× 292 1.3× 161 1.0× 203 1.3× 50 0.6× 12 634
Maria Eleftheriou United States 15 488 0.9× 166 0.7× 246 1.5× 59 0.4× 31 0.3× 28 908
Vitor B. P. Leite Brazil 17 477 0.9× 166 0.7× 170 1.0× 50 0.3× 58 0.6× 44 757
Ophir Flomenbom Israel 14 401 0.7× 233 1.0× 155 0.9× 169 1.1× 55 0.6× 39 836
Bin W. Zhang United States 14 509 1.0× 146 0.6× 169 1.0× 59 0.4× 24 0.3× 28 659
Prabhakar Bhimalapuram India 9 222 0.4× 175 0.8× 172 1.0× 68 0.4× 34 0.4× 24 568
Ikuo Fukuda Japan 17 532 1.0× 261 1.2× 170 1.0× 64 0.4× 82 0.9× 45 834
Tjerk P. Straatsma United States 7 516 1.0× 427 1.9× 192 1.1× 51 0.3× 93 1.0× 9 902
Takashi Yoshidome Japan 19 644 1.2× 247 1.1× 430 2.6× 61 0.4× 38 0.4× 51 850
Graziano Vernizzi United States 16 258 0.5× 98 0.4× 147 0.9× 139 0.9× 70 0.8× 38 828

Countries citing papers authored by Simone Marsili

Since Specialization
Citations

This map shows the geographic impact of Simone Marsili's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Simone Marsili with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Simone Marsili more than expected).

Fields of papers citing papers by Simone Marsili

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Simone Marsili. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Simone Marsili. The network helps show where Simone Marsili may publish in the future.

Co-authorship network of co-authors of Simone Marsili

This figure shows the co-authorship network connecting the top 25 collaborators of Simone Marsili. A scholar is included among the top collaborators of Simone Marsili based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Simone Marsili. Simone Marsili is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Hahn, David F., et al.. (2025). Quantification of the Impact of Structure Quality on Predicted Binding Free Energy Accuracy. Journal of Chemical Information and Modeling. 65(13). 6927–6938. 1 indexed citations
2.
Rodriguez-Rivas, Juan, Simone Marsili, David Juan, & Alfonso Valencia. (2016). Conservation of coevolving protein interfaces bridges prokaryote–eukaryote homologies in the twilight zone. Proceedings of the National Academy of Sciences. 113(52). 15018–15023. 22 indexed citations
3.
Juan, David, Juliane Perner, Enrique Carrillo de Santa Pau, et al.. (2016). Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs. Cell Reports. 14(5). 1246–1257. 30 indexed citations
4.
Sutto, Ludovico, Simone Marsili, Alfonso Valencia, & Francesco Luigi Gervasio. (2015). From residue coevolution to protein conformational ensembles and functional dynamics. Proceedings of the National Academy of Sciences. 112(44). 13567–13572. 90 indexed citations
5.
Malinverni, Duccio, Simone Marsili, Alessandro Barducci, & Paolo De Los Rios. (2015). Large-Scale Conformational Transitions and Dimerization Are Encoded in the Amino-Acid Sequences of Hsp70 Chaperones. PLoS Computational Biology. 11(6). e1004262–e1004262. 51 indexed citations
6.
Procacci, Piero, et al.. (2013). Energy-Driven Undocking (EDU-HREM) in Solute Tempering Replica Exchange Simulations. Journal of Chemical Theory and Computation. 10(1). 439–450. 11 indexed citations
7.
Sutto, Ludovico, Simone Marsili, & Francesco Luigi Gervasio. (2012). New advances in metadynamics. Wiley Interdisciplinary Reviews Computational Molecular Science. 2(5). 771–779. 135 indexed citations
8.
Marsili, Simone, et al.. (2011). New Perspective on How and Why Immunophilin FK506-Related Ligands Work. The Journal of Physical Chemistry Letters. 2(22). 2834–2839. 16 indexed citations
9.
Marsili, Simone, et al.. (2011). Intraligand Hydrophobic Interactions Rationalize Drug Affinities for Peptidyl−Prolyl Cis−Trans Isomerase Protein. The Journal of Physical Chemistry B. 115(19). 6193–6201. 12 indexed citations
10.
Guardiani, Carlo, Simone Marsili, S. Marchetti, et al.. (2010). Conformational structure of the MOG-derived peptide 101-108 in solution. Biopolymers. 96(3). 245–251. 1 indexed citations
11.
Procacci, Piero & Simone Marsili. (2010). Energy dissipation asymmetry in the non equilibrium folding/unfolding of the single molecule alanine decapeptide. Chemical Physics. 375(1). 8–15. 12 indexed citations
12.
Marsili, Simone & Piero Procacci. (2010). Free Energy Reconstruction in Bidirectional Force Spectroscopy Experiments: The Effect of the Device Stiffness. The Journal of Physical Chemistry B. 114(7). 2509–2516. 9 indexed citations
13.
Marsili, Simone, Giorgio F. Signorini, Riccardo Chelli, Massimo Marchi, & Piero Procacci. (2009). ORAC: A molecular dynamics simulation program to explore free energy surfaces in biomolecular systems at the atomistic level. Journal of Computational Chemistry. 31(5). 1106–1116. 77 indexed citations
14.
Guardiani, Carlo, Simone Marsili, Piero Procacci, & Roberto Livi. (2009). Fragment 101−108 of Myelin Oligodendrocyte Glycoprotein: A Possible Lead Compound for Multiple Sclerosis. Journal of the American Chemical Society. 131(47). 17176–17184. 3 indexed citations
15.
Chelli, Riccardo, Simone Marsili, & Piero Procacci. (2008). Calculation of the potential of mean force from nonequilibrium measurements via maximum likelihood estimators. Physical Review E. 77(3). 31104–31104. 30 indexed citations
16.
Marsili, Simone, Riccardo Chelli, Vincenzo Schettino, & Piero Procacci. (2008). Thermodynamics of stacking interactions in proteins. Physical Chemistry Chemical Physics. 10(19). 2673–2673. 73 indexed citations
17.
Chelli, Riccardo, Simone Marsili, Alessandro Barducci, & Piero Procacci. (2007). Generalization of the Jarzynski and Crooks nonequilibrium work theorems in molecular dynamics simulations. Physical Review E. 75(5). 50101–50101. 38 indexed citations
18.
Chelli, Riccardo, Simone Marsili, Alessandro Barducci, & Piero Procacci. (2007). Numerical verification of the generalized Crooks nonequilibrium work theorem for non-Hamiltonian molecular dynamics simulations. The Journal of Chemical Physics. 127(3). 34110–34110. 17 indexed citations
19.
Schettino, Vincenzo, Riccardo Chelli, Simone Marsili, et al.. (2007). Problems in molecular dynamics of condensed phases. Theoretical Chemistry Accounts. 117(5-6). 1105–1120. 5 indexed citations
20.
Procacci, Piero, Simone Marsili, Alessandro Barducci, Giorgio F. Signorini, & Riccardo Chelli. (2006). Crooks equation for steered molecular dynamics using a Nosé-Hoover thermostat. The Journal of Chemical Physics. 125(16). 164101–164101. 60 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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