Simon J. van Heeringen

6.2k total citations
48 papers, 2.6k citations indexed

About

Simon J. van Heeringen is a scholar working on Molecular Biology, Oncology and Genetics. According to data from OpenAlex, Simon J. van Heeringen has authored 48 papers receiving a total of 2.6k indexed citations (citations by other indexed papers that have themselves been cited), including 43 papers in Molecular Biology, 9 papers in Oncology and 5 papers in Genetics. Recurrent topics in Simon J. van Heeringen's work include Genomics and Chromatin Dynamics (21 papers), Epigenetics and DNA Methylation (14 papers) and RNA modifications and cancer (11 papers). Simon J. van Heeringen is often cited by papers focused on Genomics and Chromatin Dynamics (21 papers), Epigenetics and DNA Methylation (14 papers) and RNA modifications and cancer (11 papers). Simon J. van Heeringen collaborates with scholars based in Netherlands, United States and Germany. Simon J. van Heeringen's co-authors include Gert Jan C. Veenstra, Hendrik G. Stunnenberg, Eva M. Janssen‐Megens, Marc A. van Driel, Robert C. Akkers, Leonie Smeenk, Marion Lohrum, Max Koeppel, Ozren Bogdanović and Fred C.G.J. Sweep and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

In The Last Decade

Simon J. van Heeringen

47 papers receiving 2.5k citations

Peers

Countries citing papers authored by Simon J. van Heeringen

Since Specialization

Citations

This map shows the geographic impact of Simon J. van Heeringen's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Simon J. van Heeringen with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Simon J. van Heeringen more than expected).

Fields of papers citing papers by Simon J. van Heeringen

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Simon J. van Heeringen. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Simon J. van Heeringen. The network helps show where Simon J. van Heeringen may publish in the future.

Co-authorship network of co-authors of Simon J. van Heeringen

This figure shows the co-authorship network connecting the top 25 collaborators of Simon J. van Heeringen. A scholar is included among the top collaborators of Simon J. van Heeringen based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Simon J. van Heeringen. Simon J. van Heeringen is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Multi-omics analysis reveals distinct gene regulatory mechanisms between primary and organoid-derived human hepatocytes 2025 ·Disease Models & Mechanisms ·Haoyu Wu, Annie Yang, Suzan Stelloo, Floris J.M. Roos, René H. M. te Morsche, (unknown), Maria Velez, (unknown), Johannes H.W. de Wilt, Robert W. Sauerwein, Klaas W. Mulder, Simon J. van Heeringen, Monique M.A. Verstegen, Luc J. W. van der Laan, Hendrik Marks, Richárd Bártfai	1
2	Multimodal single cell analyses reveal gene networks of planarian stem cell differentiation 2025 ·Nature Communications ·(unknown), (unknown), (unknown), (unknown), (unknown), (unknown), (unknown), (unknown), Simon J. van Heeringen, Francesc Cebrià, Nathan J. Kenny, Jordi Solana	0
3	Quantification of absolute transcription factor binding affinities in the native chromatin context using BANC-seq 2023 ·Nature Biotechnology ·Hannah K. Neikes, (unknown), Cathrin Gräwe, (unknown), Pascal W.T.C. Jansen, (unknown), Marijke Baltissen, Simon J. van Heeringen, Colin Logie, Sarah A. Teichmann, Rik G.H. Lindeboom, Michiel Vermeulen	16
4	genomepy: genes and genomes at your fingertips 2023 ·Bioinformatics ·(unknown), (unknown), (unknown), Simon J. van Heeringen	2
5	Identification of the regulatory circuit governing corneal epithelial fate determination and disease 2023 ·PLoS Biology ·(unknown), Dulce Lima Cunha, (unknown), Marina Bertolin, (unknown), Jieqiong Qu, Nicholas Owen, Lorenz Latta, Berthold Seitz, (unknown), Tanja Stachon, Stefano Ferrari, Mariya Moosajee, Daniel Aberdam, Nóra Szentmáry, Simon J. van Heeringen, Huiqing Zhou	9
6	ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study 2022 ·Nucleic Acids Research ·Maria Velez, Hannah K. Neikes, (unknown), (unknown), Qian Chen, (unknown), Gert Jan C. Veenstra, Michael R. Freeman, Simon J. van Heeringen, Michiel Vermeulen	9
7	ANANSE: an enhancer network-based computational approach for predicting key transcription factors in cell fate determination 2021 ·Nucleic Acids Research ·Quan Xu, Γεώργιος Γεωργίου, (unknown), (unknown), Gert Jan C. Veenstra, Huiqing Zhou, Simon J. van Heeringen	37
8	Predicting protein condensate formation using machine learning 2021 ·Cell Reports ·Guido van Mierlo, (unknown), Jie Wang, Ina Poser, Simon J. van Heeringen, Michiel Vermeulen	70
9	WDR5, BRCA1, and BARD1 Co-regulate the DNA Damage Response and Modulate the Mesenchymal-to-Epithelial Transition during Early Reprogramming 2019 ·Stem Cell Reports ·(unknown), (unknown), Jan P. Gerlach, (unknown), (unknown), (unknown), José Silva, Simon J. van Heeringen, Chris Bakal, Klaas W. Mulder, Gert Jan C. Veenstra	14
10	Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos 2016 ·Developmental Biology ·Ila van Kruijsbergen, Saartje Hontelez, Dei M. Elurbe, Simon J. van Heeringen, Martijn A. Huynen, Gert Jan C. Veenstra	17
11	fluff: exploratory analysis and visualization of high-throughput sequencing data 2016 ·PeerJ ·Γεώργιος Γεωργίου, Simon J. van Heeringen	41
12	5-Lipoxygenase is a direct p53 target gene in humans 2015 ·Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms ·(unknown), Khalil Ali Ahmad, Jessica Roos, (unknown), Tomohiro Chiba, (unknown), Leonie Smeenk, Simon J. van Heeringen, Thorsten J. Maier, Bernd Groner, Dieter Steinhilber	29
13	Embryonic transcription is controlled by maternally defined chromatin state 2015 ·Nature Communications ·Saartje Hontelez, Ila van Kruijsbergen, Γεώργιος Γεωργίου, Simon J. van Heeringen, Ozren Bogdanović, Ryan Lister, Gert Jan C. Veenstra	78
14	Principles of nucleation of H3K27 methylation during embryonic development 2013 ·Genome Research ·Simon J. van Heeringen, Robert C. Akkers, Ila van Kruijsbergen, M. Asif Arif, Lars L. P. Hanssen, Nilofar Sharifi, Gert Jan C. Veenstra	56
15	Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis 2012 ·Genome Research ·Ozren Bogdanović, Ana Fernández‐Miñán, Juan J. Tena, Elisa de la Calle‐Mustienes, Carmen Herrera Hidalgo, (unknown), Simon J. van Heeringen, Gert Jan C. Veenstra, José Luis Gómez-Skármeta	170
16	The epigenome in early vertebrate development 2011 ·genesis ·Ozren Bogdanović, Simon J. van Heeringen, Gert Jan C. Veenstra	26
17	Nucleotide composition-linked divergence of vertebrate core promoter architecture 2011 ·Genome Research ·Simon J. van Heeringen, Waseem Akhtar, U. Jacobi, Robert C. Akkers, Yutaka Suzuki, Gert Jan C. Veenstra	24
18	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis 2011 ·Genome Research ·Ozren Bogdanović, (unknown), Simon J. van Heeringen, Arie B. Brinkman, José Luis Gómez-Skármeta, Hendrik G. Stunnenberg, Peter L. Jones, Gert Jan C. Veenstra	76
19	Genetic Identification of a Network of Factors that Functionally Interact with the Nucleosome Remodeling ATPase ISWI 2008 ·PLoS Genetics ·Giosalba Burgio, Gaspare La Rocca, Anna Sala, Walter Arancio, (unknown), (unknown), Adam S. Sperling, Jennifer A. Armstrong, Simon J. van Heeringen, Colin Logie, John W. Tamkun, Davide Corona	29
20	The novel p53 target gene IRF2BP2 participates in cell survival during the p53 stress response 2008 ·Nucleic Acids Research ·Max Koeppel, Simon J. van Heeringen, Leonie Smeenk, Anna C. Navis, Eva M. Janssen‐Megens, Marion Lohrum	44

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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