Shihao Shen

6.0k total citations · 1 hit paper
49 papers, 3.9k citations indexed

About

Shihao Shen is a scholar working on Molecular Biology, Computer Networks and Communications and Information Systems. According to data from OpenAlex, Shihao Shen has authored 49 papers receiving a total of 3.9k indexed citations (citations by other indexed papers that have themselves been cited), including 26 papers in Molecular Biology, 12 papers in Computer Networks and Communications and 11 papers in Information Systems. Recurrent topics in Shihao Shen's work include RNA Research and Splicing (17 papers), RNA and protein synthesis mechanisms (13 papers) and RNA modifications and cancer (13 papers). Shihao Shen is often cited by papers focused on RNA Research and Splicing (17 papers), RNA and protein synthesis mechanisms (13 papers) and RNA modifications and cancer (13 papers). Shihao Shen collaborates with scholars based in United States, China and Canada. Shihao Shen's co-authors include Yi Xing, Juw Won Park, Lan Lin, Zhixiang Lu, Qing Zhou, Ying Wu, Michael D. Henry, Russ P. Carstens, Peng Jiang and Claude C. Warzecha and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

In The Last Decade

Shihao Shen

48 papers receiving 3.9k citations

Hit Papers

rMATS: Robust and flexible detection of differential alte... 2014 2026 2018 2022 2014 500 1000 1.5k
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
    2014 1.6k citations Shihao Shen, Juw Won Park et al. Proceedings of the National Academy of Sciences profile →

Peers

Shihao Shen
Timo M. Breit Netherlands
Yixun Liu China
Michael O. Duff United States
Hailiang Mei Netherlands
Jing Gong China
Ning Leng United States
Hu Chen China
Leo J. Lee Canada
Raja Jothi United States
Giulio Pavesi Italy
Timo M. Breit Netherlands
Shihao Shen
Citations per year, relative to Shihao Shen Shihao Shen (= 1×) peers Timo M. Breit

Countries citing papers authored by Shihao Shen

Since Specialization
Citations

This map shows the geographic impact of Shihao Shen's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Shihao Shen with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Shihao Shen more than expected).

Fields of papers citing papers by Shihao Shen

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Shihao Shen. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Shihao Shen. The network helps show where Shihao Shen may publish in the future.

Co-authorship network of co-authors of Shihao Shen

This figure shows the co-authorship network connecting the top 25 collaborators of Shihao Shen. A scholar is included among the top collaborators of Shihao Shen based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Shihao Shen. Shihao Shen is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Yin, Qianqian, et al.. (2025). Insight into co-pyrolysis behavior of asparagine/fructose mixtures using on-line pyrolysis-GC/MS. Journal of Analytical and Applied Pyrolysis. 186. 106969–106969. 2 indexed citations
2.
Shen, Shihao, et al.. (2024). EdgeOptimizer: A programmable containerized scheduler of time-critical tasks in Kubernetes-based edge-cloud clusters. Future Generation Computer Systems. 156. 221–230. 10 indexed citations
3.
4.
Shen, Shihao, Louis Kerofsky, & Senthil Yogamani. (2023). Optical flow for autonomous driving: Applications, challenges and improvements. Electronic Imaging. 35(16). 128–1. 9 indexed citations
5.
Yin, Jun, Shihao Shen, & Qian Shi. (2022). Challenges, opportunities, and innovative statistical designs for precision oncology trials. Annals of Translational Medicine. 10(18). 1038–1038. 4 indexed citations
6.
Yin, Jun, et al.. (2021). phase1RMD: An R package for repeated measures dose-finding designs with novel toxicity and efficacy endpoints. PLoS ONE. 16(9). e0256391–e0256391. 2 indexed citations
7.
Park, Eddie, Jiguang Guo, Shihao Shen, et al.. (2017). Population and allelic variation of A-to-I RNA editing in human transcriptomes. Genome biology. 18(1). 143–143. 33 indexed citations
8.
Lin, Lan, Juw Won Park, Shyam Ramachandran, et al.. (2016). Transcriptome sequencing reveals aberrant alternative splicing in Huntington's disease. Human Molecular Genetics. 25(16). 3454–3466. 83 indexed citations
9.
Xia, Peng, Shasha Ren, Qiang Lin, et al.. (2015). Low-Intensity Pulsed Ultrasound Affects Chondrocyte Extracellular Matrix Production via an Integrin-Mediated p38 MAPK Signaling Pathway. Ultrasound in Medicine & Biology. 41(6). 1690–1700. 37 indexed citations
10.
Shen, Shihao, Juw Won Park, Zhixiang Lu, et al.. (2014). rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data. Proceedings of the National Academy of Sciences. 111(51). E5593–601. 1635 indexed citations breakdown →
11.
Lu, Zhixiang, Qin Huang, Juw Won Park, et al.. (2014). Transcriptome-wide Landscape of Pre-mRNA Alternative Splicing Associated with Metastatic Colonization. Molecular Cancer Research. 13(2). 305–318. 55 indexed citations
12.
Yu, Tianwei, Yize Zhao, & Shihao Shen. (2013). AAPL: assessing association between p‐value lists. Statistical Analysis and Data Mining The ASA Data Science Journal. 6(2). 144–155. 1 indexed citations
13.
Park, Juw Won, Collin Tokheim, Shihao Shen, & Yi Xing. (2013). Identifying Differential Alternative Splicing Events from RNA Sequencing Data Using RNASeq-MATS. Methods in molecular biology. 1038. 171–179. 53 indexed citations
14.
Shen, Shihao, Juw Won Park, Jian Huang, et al.. (2012). MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data. Nucleic Acids Research. 40(8). e61–e61. 269 indexed citations
15.
Lin, Lan, et al.. (2010). Evolution of alternative splicing in primate brain transcriptomes. Human Molecular Genetics. 19(15). 2958–2973. 40 indexed citations
16.
Warzecha, Claude C., Peng Jiang, Kimberly A. Dittmar, et al.. (2010). An ESRP‐regulated splicing programme is abrogated during the epithelial–mesenchymal transition. The EMBO Journal. 29(19). 3286–3300. 290 indexed citations
17.
Lin, Lan, et al.. (2009). Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomes. Human Molecular Genetics. 18(12). 2204–2214. 33 indexed citations
18.
Lin, Chien‐Ling, et al.. (2009). The nuclear experience of CPEB: Implications for RNA processing and translational control. RNA. 16(2). 338–348. 53 indexed citations
19.
Boudreau, Ryan L., Jodi L. McBride, Inês Martins, et al.. (2009). Nonallele-specific Silencing of Mutant and Wild-type Huntingtin Demonstrates Therapeutic Efficacy in Huntington's Disease Mice. Molecular Therapy. 17(6). 1053–1063. 272 indexed citations
20.
Warzecha, Claude C., Shihao Shen, Yi Xing, & Russ P. Carstens. (2009). The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events. RNA Biology. 6(5). 546–562. 168 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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